Detailed information of deep learning profile BP000019.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000019.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AUF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.07 -0.00 0.13 0.18 0.06 0.09 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 0.00 0.17 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.01 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4557 4335 4620 4816 4816 4524 4708 4723 4301 4947 4724 4031 4313 3809 5965 6907 2854 8047 2660 1406 1906 1637 240 6074 333 270 1848 7060 1063 3990 461 1574 3784 4734 6459 4888 5609 4881 4671 4599 4970 4806 5482 7063 5759 4414 4688 4428 5294 5390 ]
C [ 5278 5455 5194 4864 4968 5439 5302 5340 5090 4077 3809 5480 5099 7670 4438 4933 5683 2199 4901 9723 1089 15811 18992 11000 12899 18864 2556 2289 7261 2824 718 1885 7965 6104 3444 4907 4239 4752 4724 4458 4021 3812 4682 4727 4646 4663 4264 6211 6149 5087 ]
G [ 4914 4980 4780 4992 4839 4578 4699 5206 4712 5808 6699 5762 5148 4065 4015 4291 4680 6241 10046 1820 13201 1454 83 685 155 120 640 6911 9310 1878 17411 13745 2685 4459 6478 5475 4947 5238 5373 5815 6484 7059 4884 3889 4352 4562 5580 4963 3936 4681 ]
T [ 4912 4891 5067 4989 5038 5120 4952 4392 5558 4829 4429 4388 5101 4117 5243 3530 6444 3174 2054 6712 3465 759 346 1902 6274 407 14617 3401 2027 10969 1071 2457 5227 4364 3280 4391 4866 4790 4893 4789 4186 3984 4613 3982 4904 6022 5129 4059 4282 4503 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.06 -0.03 0.00 -0.05 0.03 -0.08 -0.04 -0.03 0.06 -0.06 -0.02 -0.08 -0.04 -0.02 -0.01 0.02 0.01 0.01 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.04 0.14 -0.02 0.15 0.19 0.11 0.15 0.20 0.02 -0.02 0.05 0.07 -0.04 -0.03 0.05 0.04 -0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.05 0.08 -0.02 0.14 -0.04 -0.05 -0.01 -0.08 -0.04 -0.01 0.05 0.12 -0.02 0.19 0.12 -0.02 0.03 0.05 0.02 0.01 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.06 -0.06 -0.06 0.05 -0.05 0.10 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 222

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 205

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000102.1 CTCF ENCSR000DWY fibroblast of lung Homo sapiens MA0139.2
BP000103.1 CTCF ENCSR000DXD epithelial cell of proximal tubule Homo sapiens MA0139.2
BP000104.1 CTCF ENCSR000DXI bronchial epithelial cell Homo sapiens MA0139.2
BP000105.1 CTCF ENCSR000DXQ SK-N-SH Homo sapiens MA0139.2
BP000106.1 CTCF ENCSR000DXW WERI-Rb-1 Homo sapiens MA0139.2
BP000107.1 CTCF ENCSR000DYB WI38 Homo sapiens MA0139.2
BP000108.1 CTCF ENCSR000DYD A549 Homo sapiens MA0139.2
BP000109.1 CTCF ENCSR000DZN GM12878 Homo sapiens MA0139.2
BP000110.1 CTCF ENCSR000EFI IMR-90 Homo sapiens MA0139.2
BP000111.1 CTCF ENCSR000EGM K562 Homo sapiens MA0139.2
Showing 10 profiles of page 11 from 45 pages