Detailed information of deep learning profile BP000019.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000019.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR000AUF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.10 0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.09 0.06 0.18 0.13 -0.00 0.07 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 4503 4282 4059 5129 6022 4904 3982 4613 3984 4186 4789 4893 4790 4866 4391 3280 4364 5227 2457 1071 10969 2027 3401 14617 407 6274 1902 346 759 3465 6712 2054 3174 6444 3530 5243 4117 5101 4388 4429 4829 5558 4392 4952 5120 5038 4989 5067 4891 4912 ]
C [ 4681 3936 4963 5580 4562 4352 3889 4884 7059 6484 5815 5373 5238 4947 5475 6478 4459 2685 13745 17411 1878 9310 6911 640 120 155 685 83 1454 13201 1820 10046 6241 4680 4291 4015 4065 5148 5762 6699 5808 4712 5206 4699 4578 4839 4992 4780 4980 4914 ]
G [ 5087 6149 6211 4264 4663 4646 4727 4682 3812 4021 4458 4724 4752 4239 4907 3444 6104 7965 1885 718 2824 7261 2289 2556 18864 12899 11000 18992 15811 1089 9723 4901 2199 5683 4933 4438 7670 5099 5480 3809 4077 5090 5340 5302 5439 4968 4864 5194 5455 5278 ]
T [ 5390 5294 4428 4688 4414 5759 7063 5482 4806 4970 4599 4671 4881 5609 4888 6459 4734 3784 1574 461 3990 1063 7060 1848 270 333 6074 240 1637 1906 1406 2660 8047 2854 6907 5965 3809 4313 4031 4724 4947 4301 4723 4708 4524 4816 4816 4620 4335 4557 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.10 -0.05 0.05 -0.06 -0.06 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.02 0.12 0.19 -0.02 0.12 0.05 -0.01 -0.04 -0.08 -0.01 -0.05 -0.04 0.14 -0.02 0.08 0.05 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.01 0.04 0.05 -0.03 -0.04 0.07 0.05 -0.02 0.02 0.20 0.15 0.11 0.19 0.15 -0.02 0.14 0.04 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.08 -0.02 -0.06 0.06 -0.03 -0.04 -0.08 0.03 -0.05 0.00 -0.03 -0.06 -0.01 0.04 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 538

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 222

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 205

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages