Summary information of deep learning profile DL0025.1

This page shows the summary of all deep learning-derived profiles and motifs for SRF. Please scroll down the page to browse individual datasets.

Profile summary

Name: SRF
Profile ID: DL0025.1
Class: MADS box factors
Family: Responders to external signals (SRF/RLM1)
JASPAR ID: MA0083.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P11831  
Source: ENCODE
Number of datasets: 12
Models: BPNet

Sequence logo

Contribution weight matrix (CWM)

A [ 0.00 0.00 -0.00 -0.00 0.05 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 ]
C [ 0.00 0.00 0.02 0.03 -0.00 0.05 0.00 0.00 0.14 0.19 -0.00 0.01 0.01 0.00 0.01 0.01 ]
G [ 0.00 0.02 0.01 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.12 0.05 -0.00 0.00 0.00 0.01 ]
T [ 0.01 0.00 0.01 0.00 -0.00 0.01 0.12 0.14 0.00 -0.00 0.00 -0.00 0.03 0.02 0.01 0.00 ]

Common motifs

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 47663

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4109

12 models found for SRF

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000786.1 SRF ENCSR000BGE GM12878 Homo sapiens MA0083.3
BP000787.1 SRF ENCSR000BIV H1 Homo sapiens MA0083.3
BP000788.1 SRF ENCSR000BLK K562 Homo sapiens MA0083.3
BP000789.1 SRF ENCSR000BLV HepG2 Homo sapiens MA0083.3
BP000790.1 SRF ENCSR000BMI GM12878 Homo sapiens MA0083.3
BP000791.1 SRF ENCSR000BSC HCT116 Homo sapiens MA0083.3
BP000792.1 SRF ENCSR000BTD Ishikawa Homo sapiens MA0083.3
BP000793.1 SRF ENCSR000BVA MCF-7 Homo sapiens MA0083.3
BP000794.1 SRF ENCSR041XML GM12878 Homo sapiens MA0083.3
BP000795.1 SRF ENCSR504HOI K562 Homo sapiens MA0083.3
Showing 10 profiles of page 1 from 2 pages