JASPAR - SREBF1 - BP001140.1

This page shows detailed deep learning-derived predictions and motifs for SREBF1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	SREBF1
Model ID:	BP001140.1
Cell line/tissue:	A549
Class:	Basic helix-loop-helix factors (bHLH)
Family:	bHLH-ZIP
JASPAR ID:	MA0595.1
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P36956
Source:	ENCSR897MYK
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_2

Number of seqlets: 167

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.00	-0.00	0.01	-0.00	0.00	0.01	0.00	-0.00	-0.00	-0.00	0.02	0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	-0.00	-0.00	0.02	0.00	0.02	0.00	0.01	0.01	0.00	0.01	0.00	0.00	0.00	-0.00	]
G [	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	0.00	0.02	0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	35	28	46	31	34	36	53	27	25	26	45	24	30	25	44	51	36	86	1	0	164	0	24	2	1	165	0	23	30	21	56	33	23	28	18	35	31	42	40	31	28	30	31	40	27	47	36	37	35	59	]
C [	49	57	39	44	52	58	39	51	49	55	61	63	65	82	46	37	50	25	3	164	0	142	143	142	144	0	95	63	62	78	46	54	43	75	63	62	57	67	59	46	55	61	51	45	49	58	54	41	46	49	]
G [	51	54	40	44	51	45	41	60	35	53	31	55	45	35	51	53	55	56	0	3	2	24	0	0	21	1	8	29	50	40	47	42	68	40	42	39	52	37	38	43	54	48	58	41	57	36	41	49	62	41	]
T [	32	28	42	48	30	28	34	29	58	33	30	25	27	25	26	26	26	0	163	0	1	1	0	23	1	1	64	52	25	28	18	38	33	24	44	31	27	21	30	47	30	28	27	41	34	26	36	40	24	18	]

Hypothetical CWM

A [	-0.00	-0.00	-0.00	-0.00	0.01	-0.00	-0.01	0.01	-0.02	-0.01	-0.01	-0.01	0.02	-0.02	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	-0.00	-0.01	0.02	-0.02	0.02	0.00	0.01	0.01	-0.01	0.01	0.00	0.00	0.00	-0.00	]
G [	-0.00	0.00	0.00	0.00	0.01	-0.01	0.00	0.01	0.00	0.02	-0.02	0.02	-0.01	-0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.02	0.02	-0.01	-0.01	-0.01	-0.02	0.01	-0.01	-0.01	0.01	-0.00	-0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 797

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 624

CWM

PFM

HCWM

3 profiles found for the same TF (SREBF1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001137.1	SREBF1	ENCSR000EEO	HepG2	Homo sapiens	MA0829.3
BP001138.1	SREBF1	ENCSR197DJH	MCF-7	Homo sapiens	MA0829.3
BP001139.1	SREBF1	ENCSR815ZDS	K562	Homo sapiens	MA0829.3