Detailed information of deep learning profile BP001138.1

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This page shows detailed deep learning-derived predictions and motifs for SREBF1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: SREBF1
Model ID: BP001138.1
Cell line/tissue: MCF-7
Class: Basic helix-loop-helix factors (bHLH)
Family: bHLH-ZIP
JASPAR ID: MA0829.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P36956  
Source: ENCSR197DJH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.03 -0.00 -0.00 0.04 -0.00 -0.00 -0.00 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.06 -0.00 0.01 0.00 0.00 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 0.00 0.02 0.06 0.00 0.06 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 0.05 0.00 -0.00 -0.00 -0.00 0.05 -0.00 -0.00 0.02 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1123 2406 1197 1108 1134 1138 1241 1199 1051 1080 1189 1086 1531 2504 2439 1179 1112 1101 1185 1226 1518 2931 1393 3474 286 31 5440 14 38 92 10 5659 21 862 823 1577 1055 1045 993 1725 1060 1016 993 1044 1523 1161 1079 1033 1063 1132 ]
C [ 2450 1119 1184 1109 2283 1185 1137 1082 1189 2424 1084 1956 1142 1029 1113 2368 1153 2496 2454 1136 975 715 2119 963 118 5592 18 1093 128 49 130 12 1494 2703 2286 1034 2288 2429 2106 1081 2468 2394 1172 2196 1090 1076 2467 2511 1149 2459 ]
G [ 1092 1187 2233 2367 1250 1083 2328 2459 1187 1141 1077 1135 2095 1196 1161 1070 1061 1149 1102 1118 2500 1327 1609 1364 89 184 154 4555 5654 3 5653 58 339 898 647 1560 1186 1280 1131 1922 1100 1153 1066 1057 2010 2502 1064 955 1020 1120 ]
T [ 1158 1111 1209 1239 1156 2417 1117 1083 2396 1178 2473 1646 1055 1094 1110 1206 2497 1077 1082 2343 830 850 702 22 5330 16 211 161 3 5679 30 94 3969 1360 2067 1652 1294 1069 1593 1095 1195 1260 2592 1526 1200 1084 1213 1324 2591 1112 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 0.04 -0.00 -0.02 0.04 -0.06 -0.02 -0.01 -0.03 0.05 -0.05 -0.00 0.00 -0.00 0.00 ]
C [ 0.00 0.01 0.01 0.01 -0.00 -0.02 0.06 -0.06 0.07 0.04 0.03 0.01 -0.03 0.03 0.01 0.01 0.01 0.00 ]
G [ 0.00 0.01 0.00 0.01 0.04 -0.03 0.02 0.03 0.03 0.06 -0.07 0.06 -0.02 0.00 0.01 0.00 0.01 0.01 ]
T [ 0.00 -0.00 0.00 -0.00 -0.06 0.05 -0.04 -0.01 -0.02 -0.05 0.05 -0.02 -0.00 0.03 0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1415

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1287

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 210

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 194

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 25

CWM

PFM

     

HCWM

3 profiles found for the same TF (SREBF1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001137.1 SREBF1 ENCSR000EEO HepG2 Homo sapiens MA0829.3
BP001139.1 SREBF1 ENCSR815ZDS K562 Homo sapiens MA0829.3
BP001140.1 SREBF1 ENCSR897MYK A549 Homo sapiens MA0595.1
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