JASPAR - SREBF1 - BP001137.1

This page shows detailed deep learning-derived predictions and motifs for SREBF1 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	SREBF1
Model ID:	BP001137.1
Cell line/tissue:	HepG2
Class:	Basic helix-loop-helix factors (bHLH)
Family:	bHLH-ZIP
JASPAR ID:	MA0829.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P36956
Source:	ENCSR000EEO
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 730

Contribution weight matrix (CWM)

A [	-0.00	0.00	-0.00	0.01	-0.00	-0.00	0.02	-0.00	-0.00	-0.00	-0.00	0.02	-0.00	-0.00	-0.00	-0.00	0.00	]
C [	0.00	0.00	0.00	-0.00	0.00	0.02	0.00	0.01	0.00	0.01	0.00	-0.00	0.01	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.01	-0.00	0.00	0.00	0.00	0.01	-0.00	0.01	0.00	-0.00	0.00	0.00	0.00	0.00	]
T [	0.00	-0.00	-0.00	-0.00	0.03	-0.00	-0.00	-0.00	-0.00	0.01	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	110	115	127	125	142	171	124	129	144	129	120	116	161	116	74	142	161	96	108	104	141	198	140	277	7	9	662	5	49	23	29	680	18	94	96	108	188	140	82	116	110	184	99	123	131	120	120	110	128	134	]
C [	231	246	252	262	222	213	213	213	211	227	202	256	233	240	256	240	274	268	295	271	275	197	176	91	21	636	1	573	223	382	297	15	394	293	180	239	229	214	216	253	303	193	231	303	277	240	214	233	218	228	]
G [	266	263	214	226	251	195	268	256	216	202	263	219	245	265	208	240	177	262	201	193	226	197	299	350	2	74	59	128	452	4	390	23	137	180	319	238	217	206	261	244	207	244	295	179	179	212	258	253	263	203	]
T [	123	106	137	117	115	151	125	132	159	172	145	139	91	109	192	108	118	104	126	162	88	138	115	12	700	11	8	24	6	321	14	12	181	163	135	145	96	170	171	117	110	109	105	125	143	158	138	134	121	165	]

Hypothetical CWM

A [	-0.01	-0.00	-0.00	-0.00	0.01	-0.01	-0.01	0.02	-0.02	-0.01	-0.02	-0.00	0.03	-0.01	-0.00	-0.00	-0.00	0.00	]
C [	0.00	0.01	0.00	0.00	-0.00	-0.00	0.02	-0.02	0.02	0.01	0.02	0.00	-0.01	0.01	0.01	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.01	0.01	-0.01	0.00	0.02	0.01	0.02	-0.01	0.02	-0.00	-0.00	0.00	0.01	0.01	0.00	]
T [	0.00	-0.01	-0.00	-0.00	-0.02	0.03	-0.00	-0.02	-0.01	-0.02	0.01	-0.01	-0.01	0.01	-0.00	-0.00	-0.00	-0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 983

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 590

CWM

PFM

HCWM

3 profiles found for the same TF (SREBF1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001138.1	SREBF1	ENCSR197DJH	MCF-7	Homo sapiens	MA0829.3
BP001139.1	SREBF1	ENCSR815ZDS	K562	Homo sapiens	MA0829.3
BP001140.1	SREBF1	ENCSR897MYK	A549	Homo sapiens	MA0595.1