JASPAR - SREBF1 - BP001140.1

This page shows detailed deep learning-derived predictions and motifs for SREBF1 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	SREBF1
Model ID:	BP001140.1
Cell line/tissue:	A549
Class:	Basic helix-loop-helix factors (bHLH)
Family:	bHLH-ZIP
JASPAR ID:	MA0595.1
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P36956
Source:	ENCSR897MYK
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_2

Number of seqlets: 167

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	0.00	0.02	0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	]
G [	-0.00	0.00	0.00	0.00	0.01	0.00	0.01	0.01	0.00	0.02	0.00	0.02	-0.00	-0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	0.00	0.02	-0.00	-0.00	-0.00	0.00	0.01	0.00	-0.00	0.01	-0.00	0.00	-0.00	-0.00	]

Frequency matrix

A [	18	24	40	36	26	34	41	27	28	30	47	30	21	27	31	44	24	33	38	18	28	25	52	64	1	1	23	0	1	1	0	163	0	26	26	26	25	27	25	30	33	58	29	34	28	30	48	42	28	32	]
C [	41	62	49	41	36	57	41	58	48	54	43	38	37	52	39	42	40	68	42	47	40	50	29	8	1	21	0	0	24	2	3	0	56	55	53	51	35	45	55	31	53	35	60	41	45	51	44	40	54	51	]
G [	49	46	41	54	58	49	45	51	61	55	46	59	67	57	62	63	75	43	54	46	78	62	63	95	0	144	142	143	142	0	164	3	25	50	37	46	82	65	63	61	55	49	51	39	58	52	44	39	57	49	]
T [	59	35	37	36	47	27	40	31	30	28	31	40	42	31	35	18	28	23	33	56	21	30	23	0	165	1	2	24	0	164	0	1	86	36	51	44	25	30	24	45	26	25	27	53	36	34	31	46	28	35	]

Hypothetical CWM

A [	-0.00	-0.00	-0.00	-0.00	0.01	-0.01	-0.01	0.01	-0.02	-0.01	-0.01	-0.01	0.02	-0.02	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	-0.00	-0.01	0.02	-0.02	0.02	0.00	0.01	0.00	-0.01	0.01	0.00	0.00	0.00	-0.00	]
G [	-0.00	0.00	0.00	0.00	0.01	-0.01	0.01	0.01	0.00	0.02	-0.02	0.02	-0.01	-0.00	0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.02	0.02	-0.01	-0.01	-0.01	-0.02	0.01	-0.01	-0.00	0.01	-0.00	-0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 797

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 624

CWM

PFM

HCWM

3 profiles found for the same TF (SREBF1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001137.1	SREBF1	ENCSR000EEO	HepG2	Homo sapiens	MA0829.3
BP001138.1	SREBF1	ENCSR197DJH	MCF-7	Homo sapiens	MA0829.3
BP001139.1	SREBF1	ENCSR815ZDS	K562	Homo sapiens	MA0829.3