Detailed information of deep learning profile BP001100.1

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This page shows detailed deep learning-derived predictions and motifs for PBX3 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX3
Model ID: BP001100.1
Cell line/tissue: HEK293
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA1114.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40426  
Source: ENCSR865HXK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.02 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 74 106 126 135 96 70 52 59 81 92 87 84 67 65 11 35 511 9 33 18 9 57 38 137 144 121 129 61 109 73 78 32 43 1 2 272 180 8 13 255 92 129 96 112 84 117 109 83 88 74 ]
C [ 213 237 197 120 175 203 234 245 159 176 195 248 130 245 270 194 2 43 3 4 12 296 238 124 136 156 136 170 117 208 353 216 2 222 524 143 143 17 452 93 180 174 158 185 180 170 168 163 197 209 ]
G [ 180 139 155 168 131 130 161 125 214 199 168 58 154 117 34 231 28 22 12 518 525 54 57 212 185 138 196 186 232 199 76 17 495 10 5 73 188 14 29 86 185 168 198 154 186 174 173 193 163 167 ]
T [ 80 65 69 124 145 144 100 118 93 80 97 157 196 120 232 87 6 473 499 7 1 140 214 74 82 132 86 130 89 67 40 282 7 314 16 59 36 508 53 113 90 76 95 96 97 86 97 108 99 97 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.01 -0.00 -0.01 0.01 -0.01 -0.00 0.00 0.00 -0.00 0.00 -0.01 -0.00 -0.00 -0.00 -0.01 0.00 -0.02 -0.02 0.01 0.01 -0.01 -0.01 0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 0.01 0.00 -0.00 0.00 0.01 0.01 0.00 -0.00 0.01 0.01 0.01 -0.01 0.01 0.02 -0.00 -0.00 -0.00 0.01 -0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.01 0.01 -0.00 -0.00 -0.00 0.02 0.02 -0.01 0.00 0.01 0.01 -0.00 0.00 0.01 0.01 0.01 0.00 -0.00 0.02 -0.01 -0.01 -0.00 0.00 -0.01 -0.01 0.01 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.01 -0.01 0.02 0.02 -0.02 -0.02 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 -0.01 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1844

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1273

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 926

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 332

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 297

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 292

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 173

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 156

CWM

PFM

     

HCWM

3 profiles found for the same TF (PBX3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001097.1 PBX3 ENCSR000BGR GM12878 Homo sapiens MA1114.2
BP001098.1 PBX3 ENCSR000BTN A549 Homo sapiens MA1114.2
BP001099.1 PBX3 ENCSR136EQX HepG2 Homo sapiens MA1114.2
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