Detailed information of deep learning profile BP001099.1

This page shows detailed deep learning-derived predictions and motifs for PBX3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX3
Model ID: BP001099.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA1114.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40426  
Source: ENCSR136EQX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 0.01 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

A [ 67 55 66 75 69 56 69 57 58 59 66 33 330 29 37 13 209 18 171 18 60 60 90 68 91 64 55 156 91 4 5 334 326 7 52 164 97 127 114 64 51 67 84 65 93 101 82 62 60 59 ]
C [ 115 130 141 109 109 133 114 133 106 127 78 22 16 137 51 10 11 332 29 49 128 164 111 141 90 122 158 44 27 349 345 7 9 17 177 30 82 112 41 109 123 146 91 106 100 91 120 95 90 115 ]
G [ 132 126 99 122 115 128 111 109 126 120 55 302 16 89 103 346 144 5 139 259 132 89 131 73 116 96 68 132 206 6 4 11 25 4 112 171 148 83 161 122 125 111 157 161 124 111 82 150 154 141 ]
T [ 57 60 65 65 78 54 77 72 81 65 172 14 9 116 180 2 7 16 32 45 51 58 39 89 74 89 90 39 47 12 17 19 11 343 30 6 44 49 55 76 72 47 39 39 54 68 87 64 67 56 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 -0.01 -0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.01 -0.01 0.01 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.00 -0.01 -0.00 0.00 0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.01 0.01 0.01 -0.01 -0.01 -0.00 0.01 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 ]
G [ -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 0.00 -0.01 0.00 0.01 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.01 -0.00 0.00 -0.00 -0.01 -0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 605

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 313

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 294

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 272

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 166

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 148

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 148

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 129

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 126

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 124

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 104

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 100

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 78

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 35

3 profiles found for the same TF (PBX3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001097.1 PBX3 ENCSR000BGR GM12878 Homo sapiens MA1114.2
BP001098.1 PBX3 ENCSR000BTN A549 Homo sapiens MA1114.2
BP001100.1 PBX3 ENCSR865HXK HEK293 Homo sapiens MA1114.2
Showing 3 profiles of page 1 from 1 pages
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