JASPAR - PBX3 - BP001097.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for PBX3 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	PBX3
Model ID:	BP001097.1
Cell line/tissue:	GM12878
Class:	Homeo domain factors
Family:	TALE-type homeo domain factors
JASPAR ID:	MA1114.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P40426
Source:	ENCSR000BGR
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 4243

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.07	-0.00	-0.00	0.00	0.05	-0.00	0.03	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.07	-0.00	0.00	0.01	0.00	0.00	]
G [	0.00	0.00	0.00	0.00	-0.00	0.06	0.00	0.00	-0.00	0.07	0.00	-0.00	0.00	0.02	0.00	-0.00	0.01	]
T [	-0.00	-0.00	0.00	0.00	0.03	-0.00	-0.00	0.01	0.04	-0.00	0.00	0.00	-0.00	-0.00	-0.00	0.00	-0.00	]

Frequency matrix

A [	933	962	889	889	864	972	974	988	891	986	997	1030	861	814	844	591	223	4021	218	227	19	3389	11	3488	285	708	728	848	994	1031	963	979	923	1024	873	934	1237	1218	1001	905	1040	947	1006	1001	980	992	948	1037	952	1015	]
C [	1164	1101	1218	1160	1117	1151	1159	1157	1132	1074	1174	1116	1250	1047	1087	192	70	56	1028	91	13	6	4206	14	567	1425	1212	1052	1080	1020	990	1027	1073	1069	1400	1379	1078	1037	1072	1162	1107	1141	1101	1006	1093	1067	1217	1088	1110	1099	]
G [	1229	1239	1263	1248	1304	1207	1210	1166	1192	1210	1244	1175	1230	1252	1276	270	3886	87	1613	264	4203	794	5	550	2908	1615	919	1588	1283	1273	1402	1295	1345	1209	1135	1054	1157	1134	1116	1212	1218	1245	1145	1283	1192	1245	1174	1187	1270	1211	]
T [	917	941	873	946	958	913	900	932	1028	973	828	922	902	1130	1036	3190	64	79	1384	3661	8	54	21	191	483	495	1384	755	886	919	888	942	902	941	835	876	771	854	1054	964	878	910	991	953	978	939	904	931	911	918	]

Hypothetical CWM

A [	-0.00	-0.00	-0.00	0.00	-0.01	0.00	0.07	-0.03	-0.01	-0.00	0.06	-0.02	0.04	-0.01	-0.00	-0.01	0.01	0.01	]
C [	0.01	0.01	0.00	-0.00	0.00	-0.03	-0.02	0.02	0.00	-0.03	-0.05	0.07	-0.03	0.01	0.02	0.02	0.01	0.01	]
G [	0.01	0.01	0.01	0.01	-0.02	0.06	-0.02	0.01	-0.01	0.07	0.02	-0.04	0.04	0.03	0.02	0.00	0.02	0.01	]
T [	0.00	0.00	0.00	0.01	0.04	-0.02	-0.03	0.03	0.05	-0.03	-0.03	0.02	-0.01	0.00	0.00	0.02	-0.00	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1473

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 866

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 186

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 51

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 22

CWM

PFM

HCWM

3 profiles found for the same TF (PBX3) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001098.1	PBX3	ENCSR000BTN	A549	Homo sapiens	MA1114.2
BP001099.1	PBX3	ENCSR136EQX	HepG2	Homo sapiens	MA1114.2
BP001100.1	PBX3	ENCSR865HXK	HEK293	Homo sapiens	MA1114.2