Detailed information of deep learning profile BP001100.1

This page shows detailed deep learning-derived predictions and motifs for PBX3 in HEK293 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX3
Model ID: BP001100.1
Cell line/tissue: HEK293
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA1114.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40426  
Source: ENCSR865HXK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.02 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.02 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.02 0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

A [ 97 99 108 97 86 97 96 95 76 90 113 53 508 36 59 16 314 7 282 40 67 89 130 86 132 82 74 214 140 1 7 499 473 6 87 232 120 196 157 97 80 93 118 100 144 145 124 69 65 80 ]
C [ 167 163 193 173 174 186 154 198 168 185 86 29 14 188 73 5 10 495 17 76 199 232 186 196 138 185 212 57 54 525 518 12 22 28 231 34 117 154 58 168 199 214 125 161 130 131 168 155 139 180 ]
G [ 209 197 163 168 170 180 185 158 174 180 93 452 17 143 143 524 222 2 216 353 208 117 170 136 156 136 124 238 296 12 4 3 43 2 194 270 245 130 248 195 176 159 245 234 203 175 120 197 237 213 ]
T [ 74 88 83 109 117 84 112 96 129 92 255 13 8 180 272 2 1 43 32 78 73 109 61 129 121 144 137 38 57 9 18 33 9 511 35 11 65 67 84 87 92 81 59 52 70 96 135 126 106 74 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.02 -0.02 0.02 0.02 -0.01 -0.01 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.01 -0.01 -0.01 0.00 -0.00 -0.01 -0.01 0.02 -0.00 0.00 0.01 0.01 0.01 0.00 -0.00 0.01 0.01 0.00 -0.01 0.02 0.02 -0.00 -0.00 -0.00 0.01 -0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.01 0.01 -0.00 -0.00 -0.00 0.02 0.01 -0.01 0.01 0.01 0.01 -0.00 0.00 0.01 0.01 0.00 -0.00 0.00 0.01 -0.01 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.01 -0.01 -0.01 0.01 0.01 -0.02 -0.02 0.00 -0.01 -0.00 -0.00 -0.00 -0.01 0.00 -0.00 0.00 0.00 -0.00 -0.01 0.01 -0.01 -0.00 -0.01 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1844

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1273

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 926

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 332

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 297

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 292

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 182

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 173

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 156

3 profiles found for the same TF (PBX3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001097.1 PBX3 ENCSR000BGR GM12878 Homo sapiens MA1114.2
BP001098.1 PBX3 ENCSR000BTN A549 Homo sapiens MA1114.2
BP001099.1 PBX3 ENCSR136EQX HepG2 Homo sapiens MA1114.2
Showing 3 profiles of page 1 from 1 pages
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