JASPAR - PBX3 - BP001098.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for PBX3 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	PBX3
Model ID:	BP001098.1
Cell line/tissue:	A549
Class:	Homeo domain factors
Family:	TALE-type homeo domain factors
JASPAR ID:	MA1114.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P40426
Source:	ENCSR000BTN
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 883

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.00	0.00	-0.00	-0.00	0.05	-0.00	-0.00	-0.00	0.03	-0.00	0.01	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	0.02	0.02	-0.00	-0.00	0.00	0.00	0.00	]
C [	0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.04	-0.00	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.02	0.02	0.00	-0.00	0.00	0.00	-0.00	-0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	-0.00	0.03	0.00	-0.00	-0.00	0.04	0.00	0.00	0.00	0.01	0.00	-0.00	0.00	-0.00	0.00	-0.00	0.00	0.00	0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.00	0.00	0.00	0.00	]
T [	0.00	-0.00	0.00	0.00	0.02	-0.00	-0.00	0.01	0.02	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.00	0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.02	0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	182	173	146	130	130	155	163	182	173	155	165	158	143	168	160	109	25	870	35	59	14	847	8	573	38	124	170	178	192	168	140	133	211	230	76	126	433	400	142	151	249	188	215	203	193	162	157	183	181	197	]
C [	251	250	276	279	270	283	277	276	275	268	268	275	289	244	250	69	5	3	248	64	3	2	824	23	103	349	360	263	298	219	296	296	201	213	540	539	175	154	201	291	195	241	256	201	244	259	316	248	237	252	]
G [	278	301	311	313	312	311	289	244	253	266	301	282	280	288	263	83	841	8	243	131	856	29	0	237	647	317	176	325	232	288	268	259	358	317	167	137	163	211	164	290	322	314	246	333	306	312	261	302	327	299	]
T [	172	159	150	161	171	134	154	181	182	194	149	168	171	183	210	622	12	2	357	629	10	5	51	50	95	93	177	117	161	208	179	195	113	123	100	81	112	118	376	151	117	140	166	146	140	150	149	150	138	135	]

Hypothetical CWM

A [	-0.00	-0.00	0.00	0.00	-0.00	-0.00	0.05	-0.02	-0.01	-0.00	0.03	-0.01	0.02	-0.01	-0.00	-0.00	0.00	0.01	0.00	0.00	-0.00	0.01	0.01	-0.01	-0.01	0.02	0.02	-0.00	-0.00	0.01	0.00	0.00	]
C [	0.00	0.01	-0.00	0.00	0.00	-0.02	-0.02	0.00	0.00	-0.02	-0.02	0.04	-0.01	0.00	0.01	0.01	0.01	0.01	0.00	0.01	0.01	0.00	-0.00	0.02	0.02	-0.00	-0.01	0.00	0.01	-0.00	0.00	0.00	]
G [	0.00	0.00	0.00	-0.00	-0.01	0.03	-0.00	-0.00	-0.00	0.04	0.02	-0.03	0.02	0.02	0.01	0.00	0.01	0.00	0.01	0.00	0.00	0.01	0.01	-0.01	-0.00	-0.00	-0.00	-0.01	0.00	0.01	0.00	0.00	]
T [	0.00	-0.00	0.00	0.01	0.02	-0.01	-0.02	0.03	0.03	-0.01	-0.02	0.01	-0.01	-0.00	-0.00	0.01	-0.00	0.00	0.00	0.01	0.00	-0.00	-0.00	0.00	-0.00	-0.01	-0.00	0.02	-0.00	-0.01	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2266

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 468

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 227

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 201

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 150

CWM

PFM

HCWM

3 profiles found for the same TF (PBX3) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001097.1	PBX3	ENCSR000BGR	GM12878	Homo sapiens	MA1114.2
BP001099.1	PBX3	ENCSR136EQX	HepG2	Homo sapiens	MA1114.2
BP001100.1	PBX3	ENCSR865HXK	HEK293	Homo sapiens	MA1114.2