Detailed information of deep learning profile BP001099.1

This page shows detailed deep learning-derived predictions and motifs for PBX3 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: PBX3
Model ID: BP001099.1
Cell line/tissue: HepG2
Class: Homeo domain factors
Family: TALE-type homeo domain factors
JASPAR ID: MA1114.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40426  
Source: ENCSR136EQX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.01 0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

A [ 56 67 64 87 68 54 39 39 47 72 76 55 49 44 6 30 343 11 19 17 12 47 39 90 89 74 89 39 58 51 45 32 16 7 2 180 116 9 14 172 65 81 72 77 54 78 65 65 60 57 ]
C [ 141 154 150 82 111 124 161 157 111 125 122 161 83 148 171 112 4 25 11 4 6 206 132 68 96 116 73 131 89 132 259 139 5 144 346 103 89 16 302 55 120 126 109 111 128 115 122 99 126 132 ]
G [ 115 90 95 120 91 100 106 91 146 123 109 41 112 82 30 177 17 9 7 345 349 27 44 158 122 90 141 111 164 128 49 29 332 11 10 51 137 16 22 78 127 106 133 114 133 109 109 141 130 115 ]
T [ 59 60 62 82 101 93 65 84 67 51 64 114 127 97 164 52 7 326 334 5 4 91 156 55 64 91 68 90 60 60 18 171 18 209 13 37 29 330 33 66 59 58 57 69 56 69 75 66 55 67 ]

Hypothetical CWM

A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 -0.00 -0.01 -0.01 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.01 -0.00 0.00 -0.00 -0.01 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.01 0.00 -0.01 0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 ]
G [ 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.01 0.01 0.01 -0.01 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 -0.01 -0.01 0.00 0.00 -0.00 -0.01 0.00 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 0.01 -0.01 -0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.01 -0.01 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 605

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 313

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 294

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 272

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 166

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 148

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 148

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 129

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 126

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 124

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 104

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 100

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 78

Motif name: counts.pos_patterns.pattern_18

Num. of seqlets: 35

3 profiles found for the same TF (PBX3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001097.1 PBX3 ENCSR000BGR GM12878 Homo sapiens MA1114.2
BP001098.1 PBX3 ENCSR000BTN A549 Homo sapiens MA1114.2
BP001100.1 PBX3 ENCSR865HXK HEK293 Homo sapiens MA1114.2
Showing 3 profiles of page 1 from 1 pages
  • 1 (current)