JASPAR - PBX3 - BP001098.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for PBX3 in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	PBX3
Model ID:	BP001098.1
Cell line/tissue:	A549
Class:	Homeo domain factors
Family:	TALE-type homeo domain factors
JASPAR ID:	MA1114.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P40426
Source:	ENCSR000BTN
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 883

Contribution weight matrix (CWM)

A [	-0.00	-0.00	-0.00	0.00	0.02	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.00	0.00	0.00	0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.02	0.01	-0.00	-0.00	0.02	0.00	0.00	-0.00	0.00	]
C [	0.00	0.00	0.00	0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.00	0.00	-0.00	0.00	-0.00	0.00	-0.00	0.00	0.01	0.00	0.00	0.00	0.04	-0.00	-0.00	0.00	0.03	-0.00	-0.00	0.00	0.00	0.00	]
G [	0.00	-0.00	-0.00	0.00	0.00	-0.00	0.00	0.02	0.02	-0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	-0.00	0.04	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.00	-0.00	-0.00	0.00	0.00	]
T [	0.00	0.00	0.00	-0.00	-0.00	0.02	0.02	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	-0.00	-0.00	0.01	-0.00	0.03	-0.00	-0.00	-0.00	0.05	-0.00	-0.00	0.00	0.00	-0.00	-0.00	]

Frequency matrix

A [	135	138	150	149	150	140	146	166	140	117	151	376	118	112	81	100	123	113	195	179	208	161	117	177	93	95	50	51	5	10	629	357	2	12	622	210	183	171	168	149	194	182	181	154	134	171	161	150	159	172	]
C [	299	327	302	261	312	306	333	246	314	322	290	164	211	163	137	167	317	358	259	268	288	232	325	176	317	647	237	0	29	856	131	243	8	841	83	263	288	280	282	301	266	253	244	289	311	312	313	311	301	278	]
G [	252	237	248	316	259	244	201	256	241	195	291	201	154	175	539	540	213	201	296	296	219	298	263	360	349	103	23	824	2	3	64	248	3	5	69	250	244	289	275	268	268	275	276	277	283	270	279	276	250	251	]
T [	197	181	183	157	162	193	203	215	188	249	151	142	400	433	126	76	230	211	133	140	168	192	178	170	124	38	573	8	847	14	59	35	870	25	109	160	168	143	158	165	155	173	182	163	155	130	130	146	173	182	]

Hypothetical CWM

A [	-0.00	-0.00	-0.01	-0.00	0.02	-0.00	-0.01	-0.00	0.00	-0.00	-0.00	0.00	0.01	0.00	0.00	-0.00	0.01	-0.00	-0.00	-0.01	0.01	-0.02	-0.01	0.03	0.03	-0.02	-0.01	0.02	0.01	0.00	-0.00	0.00	]
C [	0.00	0.00	0.01	0.00	-0.01	-0.00	-0.00	-0.00	-0.01	0.01	0.01	0.00	0.00	0.01	0.00	0.01	0.00	0.01	0.02	0.02	-0.03	0.02	0.04	-0.00	-0.00	-0.00	0.03	-0.01	-0.00	0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.01	0.00	-0.01	-0.00	0.02	0.02	-0.00	0.00	0.01	0.01	0.00	0.01	0.01	0.01	0.01	0.00	-0.01	0.04	-0.02	-0.02	0.00	0.00	-0.02	-0.02	0.00	0.00	-0.00	0.01	0.00	]
T [	0.00	0.00	0.01	-0.00	-0.00	0.02	0.02	-0.01	-0.01	0.01	0.01	-0.00	0.00	0.00	0.01	0.00	-0.00	-0.00	-0.01	0.02	-0.01	0.03	-0.00	-0.01	-0.02	0.05	-0.00	-0.00	0.00	0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2266

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 468

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 227

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 201

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 150

CWM

PFM

HCWM

3 profiles found for the same TF (PBX3) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001097.1	PBX3	ENCSR000BGR	GM12878	Homo sapiens	MA1114.2
BP001099.1	PBX3	ENCSR136EQX	HepG2	Homo sapiens	MA1114.2
BP001100.1	PBX3	ENCSR865HXK	HEK293	Homo sapiens	MA1114.2