JASPAR - PBX3 - BP001097.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for PBX3 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	PBX3
Model ID:	BP001097.1
Cell line/tissue:	GM12878
Class:	Homeo domain factors
Family:	TALE-type homeo domain factors
JASPAR ID:	MA1114.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P40426
Source:	ENCSR000BGR
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 4243

Contribution weight matrix (CWM)

A [	-0.00	0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	0.04	0.01	-0.00	-0.00	0.03	0.00	0.00	-0.00	-0.00	]
C [	0.01	-0.00	0.00	0.02	0.00	-0.00	0.00	0.07	-0.00	0.00	0.00	0.06	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	0.00	0.01	0.00	-0.00	0.07	0.00	0.00	0.00	0.00	0.00	0.00	0.00	-0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	0.03	-0.00	0.05	0.00	-0.00	-0.00	0.07	0.00	-0.00	0.00	-0.00	-0.00	-0.00	]

Frequency matrix

A [	918	911	931	904	939	978	953	991	910	878	964	1054	854	771	876	835	941	902	942	888	919	886	755	1384	495	483	191	21	54	8	3661	1384	79	64	3190	1036	1130	902	922	828	973	1028	932	900	913	958	946	873	941	917	]
C [	1211	1270	1187	1174	1245	1192	1283	1145	1245	1218	1212	1116	1134	1157	1054	1135	1209	1345	1295	1402	1273	1283	1588	919	1615	2908	550	5	794	4203	264	1613	87	3886	270	1276	1252	1230	1175	1244	1210	1192	1166	1210	1207	1304	1248	1263	1239	1229	]
G [	1099	1110	1088	1217	1067	1093	1006	1101	1141	1107	1162	1072	1037	1078	1379	1400	1069	1073	1027	990	1020	1080	1052	1212	1425	567	14	4206	6	13	91	1028	56	70	192	1087	1047	1250	1116	1174	1074	1132	1157	1159	1151	1117	1160	1218	1101	1164	]
T [	1015	952	1037	948	992	980	1001	1006	947	1040	905	1001	1218	1237	934	873	1024	923	979	963	1031	994	848	728	708	285	3488	11	3389	19	227	218	4021	223	591	844	814	861	1030	997	986	891	988	974	972	864	889	889	962	933	]

Hypothetical CWM

A [	0.01	-0.00	0.02	0.00	0.00	-0.01	0.02	-0.03	-0.03	0.05	0.03	-0.03	-0.02	0.04	0.01	0.00	0.00	0.00	]
C [	0.01	0.02	0.00	0.02	0.03	0.04	-0.04	0.02	0.07	-0.01	0.01	-0.02	0.06	-0.02	0.01	0.01	0.01	0.01	]
G [	0.01	0.01	0.02	0.02	0.01	-0.03	0.07	-0.05	-0.03	0.00	0.02	-0.02	-0.03	0.00	-0.00	0.00	0.01	0.01	]
T [	0.01	0.01	-0.01	-0.00	-0.01	0.04	-0.02	0.06	-0.00	-0.01	-0.03	0.07	0.00	-0.01	0.00	-0.00	-0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1473

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 866

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 186

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 51

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 22

CWM

PFM

HCWM

3 profiles found for the same TF (PBX3) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001098.1	PBX3	ENCSR000BTN	A549	Homo sapiens	MA1114.2
BP001099.1	PBX3	ENCSR136EQX	HepG2	Homo sapiens	MA1114.2
BP001100.1	PBX3	ENCSR865HXK	HEK293	Homo sapiens	MA1114.2