Detailed information of deep learning profile BP001092.1

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This page shows detailed deep learning-derived predictions and motifs for MEF2A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MEF2A
Model ID: BP001092.1
Cell line/tissue: HepG2
Class: MADS box factors
Family: Regulators of differentiation
JASPAR ID: MA0052.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02078  
Source: ENCSR291MJH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.01 -0.00 0.02 0.00 0.01 0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 -0.00 0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.02 -0.00 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.03 -0.00 0.03 0.02 0.03 0.02 0.03 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 88 97 95 95 90 86 102 131 115 110 85 90 101 97 99 71 99 95 90 121 37 8 6 353 21 62 33 90 4 319 41 150 136 76 106 92 90 91 94 97 99 120 109 89 86 83 95 94 106 109 ]
C [ 90 81 86 85 86 82 88 68 82 77 82 81 82 83 88 113 91 69 55 18 21 291 3 2 1 7 0 2 9 1 10 144 88 122 107 65 65 82 73 80 89 58 70 89 83 88 94 82 81 73 ]
G [ 84 77 89 85 88 91 96 80 76 89 77 86 83 85 94 85 67 104 132 126 134 9 2 4 0 4 6 15 2 36 291 23 42 70 71 102 124 89 102 85 91 78 76 88 78 86 80 78 83 70 ]
T [ 98 105 90 95 96 101 74 81 87 84 116 103 94 95 79 91 103 92 83 95 168 52 349 1 338 287 321 253 345 4 18 43 94 92 76 101 81 98 91 98 81 104 105 94 113 103 91 106 90 108 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.01 -0.01 -0.01 0.04 0.00 0.00 -0.00 0.01 -0.02 0.02 0.00 0.01 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.00 -0.00 -0.01 0.03 -0.01 -0.03 -0.01 -0.01 -0.02 -0.02 -0.00 -0.00 -0.00 0.02 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 ]
G [ 0.00 0.01 0.01 0.01 0.01 0.00 0.01 0.01 0.02 0.01 -0.01 -0.00 -0.00 -0.03 -0.01 -0.00 -0.01 -0.02 0.00 0.03 -0.01 -0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.01 0.03 -0.01 0.03 0.02 0.03 0.02 0.04 -0.01 -0.01 -0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1352

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 536

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 141

CWM

PFM

     

HCWM

3 profiles found for the same TF (MEF2A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001089.1 MEF2A ENCSR000BKB GM12878 Homo sapiens MA0052.5
BP001090.1 MEF2A ENCSR000BNV K562 Homo sapiens MA0052.5
BP001091.1 MEF2A ENCSR000BVC SK-N-SH Homo sapiens MA0052.5
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