Detailed information of deep learning profile BP001089.1

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This page shows detailed deep learning-derived predictions and motifs for MEF2A in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MEF2A
Model ID: BP001089.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Regulators of differentiation
JASPAR ID: MA0052.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02078  
Source: ENCSR000BKB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.06 0.00 0.00 0.00 0.01 -0.00 0.05 -0.00 0.00 0.00 -0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.00 0.06 -0.00 0.04 0.03 0.04 0.02 0.04 0.00 -0.00 -0.00 0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 1523 1481 1455 1500 1529 1561 1514 1523 1524 1562 1522 1455 1415 1475 1396 1547 1599 1571 1561 772 297 1 4917 657 661 463 1458 549 5170 851 1926 1922 1482 1442 1383 1428 1452 1575 1490 1519 1491 1524 1446 1518 1497 1483 1482 1498 1590 1579 ]
C [ 1034 1161 1117 1074 1078 1021 1102 1063 1115 966 965 1185 1100 1130 1372 1147 850 748 352 385 3603 131 15 16 50 154 160 223 0 197 1877 1240 1357 1308 972 988 1022 960 956 972 996 1035 1077 1082 1144 1103 1125 1053 1013 960 ]
G [ 1030 1048 1081 1100 1104 1090 1115 1038 1049 1111 1205 966 980 1075 986 934 1362 1249 1265 2045 284 0 39 13 54 12 34 166 10 3617 502 492 844 849 1176 1245 1178 1113 1123 1082 1071 955 981 979 1010 1052 1044 1063 1077 1065 ]
T [ 1610 1507 1544 1523 1486 1525 1466 1573 1509 1558 1505 1591 1702 1517 1443 1569 1386 1629 2019 1995 1013 5065 226 4511 4432 4568 3545 4259 17 532 892 1543 1514 1598 1666 1536 1545 1549 1628 1624 1639 1683 1693 1618 1546 1559 1546 1583 1517 1593 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 -0.01 -0.04 0.06 0.02 0.02 0.01 0.02 -0.01 0.05 0.00 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.00 -0.01 -0.00 0.05 0.02 -0.03 -0.04 -0.03 -0.01 -0.02 -0.02 -0.04 -0.01 0.02 0.02 0.02 0.02 ]
G [ 0.02 0.02 0.02 0.02 -0.01 -0.04 -0.03 -0.03 -0.03 -0.04 -0.04 -0.02 0.04 0.05 -0.00 -0.00 0.01 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.01 0.07 -0.00 0.04 0.04 0.04 0.03 0.04 -0.05 -0.01 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3945

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2939

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1967

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1223

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1096

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 606

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 83

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 73

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 44

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 36

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 21

CWM

PFM

     

HCWM

3 profiles found for the same TF (MEF2A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001090.1 MEF2A ENCSR000BNV K562 Homo sapiens MA0052.5
BP001091.1 MEF2A ENCSR000BVC SK-N-SH Homo sapiens MA0052.5
BP001092.1 MEF2A ENCSR291MJH HepG2 Homo sapiens MA0052.5
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