Detailed information of deep learning profile BP001092.1

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This page shows detailed deep learning-derived predictions and motifs for MEF2A in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MEF2A
Model ID: BP001092.1
Cell line/tissue: HepG2
Class: MADS box factors
Family: Regulators of differentiation
JASPAR ID: MA0052.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02078  
Source: ENCSR291MJH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.03 0.02 0.03 0.02 0.03 -0.00 0.03 0.00 0.01 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 -0.00 0.02 0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.01 -0.00 0.00 0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.01 0.00 0.02 -0.00 0.01 0.00 0.00 0.00 0.04 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 108 90 106 91 103 113 94 105 104 81 98 91 98 81 101 76 92 94 43 18 4 345 253 321 287 338 1 349 52 168 95 83 92 103 91 79 95 94 103 116 84 87 81 74 101 96 95 90 105 98 ]
C [ 70 83 78 80 86 78 88 76 78 91 85 102 89 124 102 71 70 42 23 291 36 2 15 6 4 0 4 2 9 134 126 132 104 67 85 94 85 83 86 77 89 76 80 96 91 88 85 89 77 84 ]
G [ 73 81 82 94 88 83 89 70 58 89 80 73 82 65 65 107 122 88 144 10 1 9 2 0 7 1 2 3 291 21 18 55 69 91 113 88 83 82 81 82 77 82 68 88 82 86 85 86 81 90 ]
T [ 109 106 94 95 83 86 89 109 120 99 97 94 91 90 92 106 76 136 150 41 319 4 90 33 62 21 353 6 8 37 121 90 95 99 71 99 97 101 90 85 110 115 131 102 86 90 95 95 97 88 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.01 -0.01 -0.01 0.04 0.02 0.03 0.02 0.03 -0.01 0.03 0.01 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 -0.00 ]
C [ 0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.00 -0.00 -0.01 0.03 0.00 -0.02 -0.01 -0.00 -0.01 -0.03 -0.00 -0.00 -0.01 0.01 0.02 0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.01 0.02 -0.00 -0.00 -0.00 -0.02 -0.02 -0.01 -0.01 -0.03 -0.01 0.03 -0.01 -0.00 0.00 0.01 0.01 0.01 0.01 0.01 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.01 0.00 0.02 -0.02 0.01 -0.00 0.00 0.00 0.04 -0.01 -0.01 -0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2182

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1352

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 536

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 171

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 141

CWM

PFM

     

HCWM

3 profiles found for the same TF (MEF2A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001089.1 MEF2A ENCSR000BKB GM12878 Homo sapiens MA0052.5
BP001090.1 MEF2A ENCSR000BNV K562 Homo sapiens MA0052.5
BP001091.1 MEF2A ENCSR000BVC SK-N-SH Homo sapiens MA0052.5
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