JASPAR - MEF2A - BP001091.1

This page shows detailed deep learning-derived predictions and motifs for MEF2A in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	MEF2A
Model ID:	BP001091.1
Cell line/tissue:	SK-N-SH
Class:	MADS box factors
Family:	Regulators of differentiation
JASPAR ID:	MA0052.5
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q02078
Source:	ENCSR000BVC
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 4045

Contribution weight matrix (CWM)

A [	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.03	0.02	0.03	0.03	0.04	-0.00	0.05	0.00	0.00	0.00	-0.00	-0.00	]
C [	0.00	-0.00	-0.00	-0.00	0.03	0.01	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.01	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.01	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.03	-0.00	-0.00	-0.00	0.00	]
T [	-0.00	-0.00	0.00	0.00	-0.00	0.03	-0.00	0.00	0.00	0.00	0.00	0.05	0.00	-0.00	-0.00	0.00	0.00	0.00	]

Frequency matrix

A [	1196	1220	1188	1102	1236	1218	1217	1245	1178	1192	1213	1274	1207	1185	1287	1311	1338	1296	1235	660	498	12	3226	2868	3601	3563	3731	101	3963	734	1629	1635	1157	980	1202	1092	1174	1231	1196	1213	1272	1189	1216	1194	1189	1198	1233	1177	1203	1242	]
C [	817	838	869	826	827	841	837	829	847	848	832	840	856	897	981	902	769	614	418	334	2957	1321	265	23	4	36	4	6	1	127	1585	901	1114	1124	736	791	875	766	789	844	833	767	811	828	923	890	827	827	840	768	]
G [	846	796	786	893	894	872	823	827	797	732	830	855	807	812	742	733	946	1063	917	1545	141	0	79	295	162	27	3	2	80	2995	272	309	642	630	881	1092	892	938	798	824	735	942	883	845	840	826	839	940	878	875	]
T [	1186	1191	1202	1224	1088	1114	1168	1144	1223	1273	1170	1076	1175	1151	1035	1099	992	1072	1475	1506	449	2712	475	859	278	419	307	3936	1	189	559	1200	1132	1311	1226	1070	1104	1110	1262	1164	1205	1147	1135	1178	1093	1131	1146	1101	1124	1160	]

Hypothetical CWM

A [	0.00	0.00	-0.00	-0.00	-0.00	-0.04	0.03	0.02	0.03	0.03	0.04	-0.00	0.05	0.00	0.01	0.01	0.00	-0.00	]
C [	0.01	0.00	-0.00	-0.01	0.03	0.03	-0.02	-0.03	-0.04	-0.02	-0.04	-0.03	-0.03	-0.01	0.02	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.02	-0.01	-0.04	-0.02	-0.01	-0.01	-0.03	-0.04	-0.04	-0.00	0.04	-0.01	-0.01	0.00	0.00	]
T [	-0.00	0.00	0.01	0.01	-0.00	0.04	-0.00	0.02	0.01	0.01	0.02	0.05	-0.04	-0.01	-0.00	0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4886

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 369

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 201

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 195

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 20

CWM

PFM

HCWM

3 profiles found for the same TF (MEF2A) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001089.1	MEF2A	ENCSR000BKB	GM12878	Homo sapiens	MA0052.5
BP001090.1	MEF2A	ENCSR000BNV	K562	Homo sapiens	MA0052.5
BP001092.1	MEF2A	ENCSR291MJH	HepG2	Homo sapiens	MA0052.5