JASPAR - MEF2A - BP001091.1

This page shows detailed deep learning-derived predictions and motifs for MEF2A in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	MEF2A
Model ID:	BP001091.1
Cell line/tissue:	SK-N-SH
Class:	MADS box factors
Family:	Regulators of differentiation
JASPAR ID:	MA0052.5
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q02078
Source:	ENCSR000BVC
Model:	BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 4045

Contribution weight matrix (CWM)

A [	0.00	0.00	0.00	-0.00	-0.00	0.00	0.05	0.00	0.00	0.00	0.00	-0.00	0.03	-0.00	0.00	0.00	-0.00	-0.00	]
C [	0.00	-0.00	-0.00	-0.00	0.03	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.01	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.01	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.01	0.03	-0.00	-0.00	-0.00	0.00	]
T [	-0.00	-0.00	0.00	0.00	0.00	0.05	-0.00	0.04	0.03	0.03	0.02	0.03	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	]

Frequency matrix

A [	1160	1124	1101	1146	1131	1093	1178	1135	1147	1205	1164	1262	1110	1104	1070	1226	1311	1132	1200	559	189	1	3936	307	419	278	859	475	2712	449	1506	1475	1072	992	1099	1035	1151	1175	1076	1170	1273	1223	1144	1168	1114	1088	1224	1202	1191	1186	]
C [	875	878	940	839	826	840	845	883	942	735	824	798	938	892	1092	881	630	642	309	272	2995	80	2	3	27	162	295	79	0	141	1545	917	1063	946	733	742	812	807	855	830	732	797	827	823	872	894	893	786	796	846	]
G [	768	840	827	827	890	923	828	811	767	833	844	789	766	875	791	736	1124	1114	901	1585	127	1	6	4	36	4	23	265	1321	2957	334	418	614	769	902	981	897	856	840	832	848	847	829	837	841	827	826	869	838	817	]
T [	1242	1203	1177	1233	1198	1189	1194	1216	1189	1272	1213	1196	1231	1174	1092	1202	980	1157	1635	1629	734	3963	101	3731	3563	3601	2868	3226	12	498	660	1235	1296	1338	1311	1287	1185	1207	1274	1213	1192	1178	1245	1217	1218	1236	1102	1188	1220	1196	]

Hypothetical CWM

A [	0.00	0.00	0.00	-0.00	-0.01	-0.04	0.05	0.02	0.01	0.01	0.02	-0.00	0.04	-0.00	0.01	0.01	0.00	-0.00	]
C [	0.00	0.00	-0.01	-0.01	0.04	-0.00	-0.04	-0.04	-0.03	-0.01	-0.01	-0.02	-0.04	-0.01	0.02	0.01	0.01	0.01	]
G [	0.01	0.01	0.01	0.02	-0.01	-0.03	-0.03	-0.04	-0.02	-0.04	-0.03	-0.02	0.03	0.03	-0.01	-0.00	0.00	0.01	]
T [	-0.00	0.00	0.01	0.01	0.00	0.05	-0.00	0.04	0.03	0.03	0.02	0.03	-0.04	-0.00	-0.00	-0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4886

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 369

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 201

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 195

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 20

CWM

PFM

HCWM

3 profiles found for the same TF (MEF2A) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001089.1	MEF2A	ENCSR000BKB	GM12878	Homo sapiens	MA0052.5
BP001090.1	MEF2A	ENCSR000BNV	K562	Homo sapiens	MA0052.5
BP001092.1	MEF2A	ENCSR291MJH	HepG2	Homo sapiens	MA0052.5