JASPAR - MEF2A - BP001090.1

This page shows detailed deep learning-derived predictions and motifs for MEF2A in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	MEF2A
Model ID:	BP001090.1
Cell line/tissue:	K562
Class:	MADS box factors
Family:	Regulators of differentiation
JASPAR ID:	MA0052.5
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q02078
Source:	ENCSR000BNV
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 3880

Contribution weight matrix (CWM)

A [	0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.07	0.00	0.00	0.00	0.01	-0.00	0.04	-0.00	0.00	0.00	0.00	-0.00	]
C [	0.00	-0.00	-0.00	-0.00	0.04	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.01	0.00	0.00	0.00	]
G [	0.00	0.00	0.00	0.01	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.02	0.04	-0.00	-0.00	-0.00	0.00	]
T [	-0.00	-0.00	-0.00	0.00	0.00	0.08	-0.00	0.06	0.04	0.05	0.02	0.04	0.00	-0.00	-0.00	0.00	-0.00	0.00	]

Frequency matrix

A [	1003	925	955	1006	981	1006	1037	956	1027	998	1081	953	965	1021	1081	1116	1169	1093	414	125	2	3785	351	446	227	882	445	2372	394	1358	1206	968	935	881	918	1004	959	927	968	1102	1062	961	1010	950	974	989	1036	1077	1066	1071	]
C [	982	978	972	957	937	940	878	935	882	879	928	948	948	1078	928	678	577	326	335	3070	77	9	8	53	174	373	122	9	159	1594	1102	1137	1002	798	785	874	893	843	901	880	846	910	899	1001	980	922	856	848	841	861	]
G [	905	925	889	919	939	881	937	951	906	964	896	910	952	875	850	1147	1127	1115	1647	107	3	15	8	35	2	65	352	1495	2949	358	417	648	742	987	1044	987	971	915	912	839	879	923	878	888	918	910	958	889	864	921	]
T [	990	1052	1064	998	1023	1053	1028	1038	1065	1039	975	1069	1015	906	1021	939	1007	1346	1484	578	3798	71	3513	3346	3477	2560	2961	4	378	570	1155	1127	1201	1214	1133	1015	1057	1195	1099	1059	1093	1086	1093	1041	1008	1059	1030	1066	1109	1027	]

Hypothetical CWM

A [	0.00	0.00	0.00	0.01	-0.01	-0.02	-0.06	0.07	0.02	0.03	0.02	0.03	0.00	0.06	0.00	0.02	0.01	0.00	-0.00	]
C [	0.01	0.01	0.00	-0.00	-0.00	0.05	0.01	-0.04	-0.05	-0.04	-0.01	-0.01	-0.03	-0.04	-0.01	0.03	0.01	0.02	0.01	]
G [	0.01	0.01	0.02	0.01	0.03	-0.02	-0.04	-0.04	-0.04	-0.04	-0.07	-0.04	-0.01	0.04	0.05	-0.01	0.00	0.01	0.01	]
T [	-0.00	-0.00	0.00	0.00	0.02	0.01	0.08	-0.00	0.06	0.04	0.05	0.03	0.04	-0.07	-0.01	-0.01	0.01	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3022

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1161

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 229

CWM

PFM

HCWM

3 profiles found for the same TF (MEF2A) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001089.1	MEF2A	ENCSR000BKB	GM12878	Homo sapiens	MA0052.5
BP001091.1	MEF2A	ENCSR000BVC	SK-N-SH	Homo sapiens	MA0052.5
BP001092.1	MEF2A	ENCSR291MJH	HepG2	Homo sapiens	MA0052.5