Detailed information of deep learning profile BP001089.1

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This page shows detailed deep learning-derived predictions and motifs for MEF2A in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: MEF2A
Model ID: BP001089.1
Cell line/tissue: GM12878
Class: MADS box factors
Family: Regulators of differentiation
JASPAR ID: MA0052.5
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q02078  
Source: ENCSR000BKB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.04 0.02 0.04 0.03 0.04 -0.00 0.06 0.00 0.00 0.00 0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 -0.00 0.05 -0.00 0.01 0.00 0.00 0.00 0.06 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1593 1517 1583 1546 1559 1546 1618 1693 1683 1639 1624 1628 1549 1545 1536 1666 1598 1514 1543 892 532 17 4259 3545 4568 4432 4511 226 5065 1013 1995 2019 1629 1386 1569 1443 1517 1702 1591 1505 1558 1509 1573 1466 1525 1486 1523 1544 1507 1610 ]
C [ 1065 1077 1063 1044 1052 1010 979 981 955 1071 1082 1123 1113 1178 1245 1176 849 844 492 502 3617 10 166 34 12 54 13 39 0 284 2045 1265 1249 1362 934 986 1075 980 966 1205 1111 1049 1038 1115 1090 1104 1100 1081 1048 1030 ]
G [ 960 1013 1053 1125 1103 1144 1082 1077 1035 996 972 956 960 1022 988 972 1308 1357 1240 1877 197 0 223 160 154 50 16 15 131 3603 385 352 748 850 1147 1372 1130 1100 1185 965 966 1115 1063 1102 1021 1078 1074 1117 1161 1034 ]
T [ 1579 1590 1498 1482 1483 1497 1518 1446 1524 1491 1519 1490 1575 1452 1428 1383 1442 1482 1922 1926 851 5170 549 1458 463 661 657 4917 1 297 772 1561 1571 1599 1547 1396 1475 1415 1455 1522 1562 1524 1523 1514 1561 1529 1500 1455 1481 1523 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.01 -0.05 0.04 0.03 0.04 0.04 0.04 -0.00 0.07 0.01 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.01 -0.00 -0.00 0.05 0.04 -0.02 -0.04 -0.04 -0.03 -0.03 -0.03 -0.04 -0.01 0.02 0.02 0.02 0.02 ]
G [ 0.02 0.02 0.02 0.02 -0.01 -0.04 -0.02 -0.02 -0.01 -0.03 -0.04 -0.03 0.02 0.05 -0.00 -0.01 0.00 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.00 0.05 -0.01 0.02 0.01 0.02 0.02 0.06 -0.04 -0.01 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3945

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 3304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2939

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1967

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1223

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1096

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 606

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 83

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 73

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 44

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 36

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 21

CWM

PFM

     

HCWM

3 profiles found for the same TF (MEF2A) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001090.1 MEF2A ENCSR000BNV K562 Homo sapiens MA0052.5
BP001091.1 MEF2A ENCSR000BVC SK-N-SH Homo sapiens MA0052.5
BP001092.1 MEF2A ENCSR291MJH HepG2 Homo sapiens MA0052.5
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