Detailed information of deep learning profile BP001069.1

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This page shows detailed deep learning-derived predictions and motifs for ZSCAN29 in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZSCAN29
Model ID: BP001069.1
Cell line/tissue: HepG2
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1602.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8IWY8  
Source: ENCSR422VAG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.03 0.00 0.01 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.03 -0.00 0.00 0.00 0.00 -0.00 0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.00 0.00 0.02 0.00 0.02 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 288 335 295 321 329 351 293 316 288 307 313 294 317 327 343 284 224 279 359 220 226 12 17 89 61 1350 118 806 37 597 217 259 248 317 314 291 332 307 311 307 318 309 329 311 301 330 288 314 311 316 ]
C [ 368 355 398 372 378 335 366 339 391 390 342 392 342 374 362 297 394 559 435 403 338 5 43 874 142 11 971 46 1259 146 60 349 690 467 395 401 352 415 427 369 384 393 383 393 410 372 401 379 395 359 ]
G [ 392 369 368 369 354 385 417 376 366 342 396 369 390 382 379 497 460 246 270 471 171 1351 54 125 87 7 50 424 17 337 1008 422 205 240 361 346 355 342 351 373 365 363 390 374 348 346 369 341 367 360 ]
T [ 324 313 311 310 311 301 296 341 327 333 321 317 323 289 288 294 294 288 308 278 637 4 1258 284 1082 4 233 96 59 292 87 342 229 348 302 334 333 308 283 323 305 307 270 294 313 324 314 338 299 337 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.00 -0.00 0.00 -0.01 0.00 -0.01 0.03 -0.00 0.01 -0.01 0.01 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 0.01 -0.01 -0.00 0.01 -0.00 -0.01 0.02 -0.01 0.02 -0.00 -0.00 0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.01 -0.00 0.03 -0.00 -0.00 -0.00 0.00 -0.01 0.01 -0.01 0.01 0.01 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.01 -0.01 0.02 0.01 0.02 -0.01 0.00 -0.00 0.00 -0.00 -0.01 0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2479

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2304

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1253

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1019

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 719

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 426

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 386

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 113

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 101

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 73

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 43

CWM

PFM

     

HCWM

3 profiles found for the same TF (ZSCAN29) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001067.1 ZSCAN29 ENCSR175SZH K562 Homo sapiens MA1602.2
BP001068.1 ZSCAN29 ENCSR412YGM GM12878 Homo sapiens MA1602.2
BP001070.1 ZSCAN29 ENCSR635EXI K562 Homo sapiens MA1602.2
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