Detailed information of deep learning profile BP001067.1

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This page shows detailed deep learning-derived predictions and motifs for ZSCAN29 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZSCAN29
Model ID: BP001067.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1602.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8IWY8  
Source: ENCSR175SZH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 0.00 0.05 0.00 -0.00 -0.00 -0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.00 0.02 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 -0.00 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.02 -0.00 -0.00 -0.00 0.05 -0.00 0.02 -0.00 0.00 0.03 -0.00 -0.00 0.01 0.00 0.01 0.00 ]
T [ 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 0.03 -0.00 0.07 -0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 888 893 867 919 882 785 804 760 784 729 714 854 810 851 721 728 570 975 242 672 183 30 1029 57 2836 98 2952 10 991 707 615 604 720 791 682 708 812 782 809 775 800 823 765 771 760 779 790 743 768 772 ]
C [ 844 739 843 826 890 936 927 931 817 828 801 772 863 740 795 489 307 885 2385 1131 185 1169 90 12 40 132 247 3244 752 1221 691 683 1146 1094 932 952 841 765 863 932 904 812 845 813 791 803 872 917 870 862 ]
G [ 815 907 872 803 869 838 843 944 868 935 884 850 813 941 1003 1178 1983 722 220 411 2726 22 2118 133 446 3017 84 8 993 835 1170 1156 772 610 795 834 815 982 967 850 848 847 954 842 913 895 871 882 900 895 ]
T [ 788 796 753 787 694 776 761 700 866 843 936 859 849 803 816 940 475 753 488 1121 241 2114 98 3133 13 88 52 73 599 572 859 892 697 840 926 841 867 806 696 778 783 853 771 909 871 858 802 793 797 806 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.01 -0.00 -0.01 -0.01 -0.04 0.03 -0.02 0.07 -0.01 0.06 -0.03 0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.01 0.01 0.03 0.04 -0.01 0.05 -0.03 -0.02 -0.02 0.00 0.00 0.07 0.00 0.02 0.00 0.00 ]
G [ 0.01 0.02 -0.00 -0.01 -0.00 0.05 -0.04 0.04 -0.01 0.02 0.03 -0.01 -0.03 0.03 0.01 0.02 0.01 ]
T [ 0.00 -0.00 0.01 0.01 0.01 -0.01 0.05 -0.01 0.08 -0.04 0.01 -0.03 0.01 -0.00 -0.00 0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6841

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 440

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 163

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 122

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 103

CWM

PFM

     

HCWM

3 profiles found for the same TF (ZSCAN29) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001068.1 ZSCAN29 ENCSR412YGM GM12878 Homo sapiens MA1602.2
BP001069.1 ZSCAN29 ENCSR422VAG HepG2 Homo sapiens MA1602.2
BP001070.1 ZSCAN29 ENCSR635EXI K562 Homo sapiens MA1602.2
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