JASPAR - ZSCAN29 - BP001068.1

This page shows detailed deep learning-derived predictions and motifs for ZSCAN29 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZSCAN29
Model ID:	BP001068.1
Cell line/tissue:	GM12878
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA1602.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q8IWY8
Source:	ENCSR412YGM
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 895

Contribution weight matrix (CWM)

A [	0.00	0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.04	0.00	0.04	-0.00	0.00	-0.00	-0.00	-0.00	]
C [	-0.00	-0.00	0.00	0.02	0.01	-0.00	0.01	-0.00	-0.00	0.00	-0.00	-0.00	0.04	0.00	0.01	0.00	-0.00	]
G [	0.00	0.01	0.00	-0.00	0.00	0.03	-0.00	0.02	-0.00	-0.00	0.02	-0.00	-0.00	0.01	0.00	0.01	0.00	]
T [	0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.01	-0.00	0.05	0.00	0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.00	]

Frequency matrix

A [	227	220	217	201	198	210	197	182	204	207	205	182	204	203	201	179	180	145	225	70	144	47	3	247	6	802	19	819	3	262	189	161	134	191	170	182	177	203	188	209	199	212	204	212	188	196	190	184	195	189	]
C [	237	222	220	238	240	263	241	269	246	219	237	231	213	242	222	211	158	96	255	668	306	30	349	33	3	18	27	48	872	194	347	177	168	318	355	235	266	242	237	243	253	251	237	237	247	230	248	243	275	265	]
G [	225	239	252	237	240	235	259	256	265	252	258	266	225	232	268	281	336	510	265	59	146	766	13	600	21	69	812	17	3	318	222	386	350	214	164	242	262	217	257	254	248	248	236	239	244	252	253	246	232	247	]
T [	206	214	206	219	217	187	198	188	180	217	195	216	253	218	204	224	221	144	150	98	299	52	530	15	865	6	37	11	17	121	137	171	243	172	206	236	190	233	213	189	195	184	218	207	216	217	204	222	193	194	]

Hypothetical CWM

A [	0.00	0.00	-0.00	-0.01	-0.01	-0.02	0.02	-0.02	0.04	-0.02	0.04	-0.02	0.00	-0.00	0.00	0.00	0.00	]
C [	-0.00	-0.01	0.02	0.02	-0.02	0.02	-0.01	-0.01	0.01	-0.01	-0.01	0.04	0.00	0.01	-0.00	-0.00	0.01	]
G [	0.00	0.01	-0.01	0.00	0.04	-0.02	0.02	-0.01	-0.01	0.03	-0.01	-0.03	0.02	0.00	0.01	0.00	-0.00	]
T [	0.00	-0.00	0.00	0.00	-0.01	0.03	-0.02	0.05	-0.02	0.01	-0.01	0.00	-0.01	-0.01	-0.00	0.01	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1025

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 231

CWM

PFM

HCWM

3 profiles found for the same TF (ZSCAN29) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001067.1	ZSCAN29	ENCSR175SZH	K562	Homo sapiens	MA1602.2
BP001069.1	ZSCAN29	ENCSR422VAG	HepG2	Homo sapiens	MA1602.2
BP001070.1	ZSCAN29	ENCSR635EXI	K562	Homo sapiens	MA1602.2