JASPAR - ZSCAN29 - BP001068.1

This page shows detailed deep learning-derived predictions and motifs for ZSCAN29 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZSCAN29
Model ID:	BP001068.1
Cell line/tissue:	GM12878
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA1602.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	Q8IWY8
Source:	ENCSR412YGM
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 895

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.00	0.05	-0.00	0.01	-0.00	0.00	-0.00	-0.00	-0.00	0.00	]
C [	0.00	0.01	0.00	0.01	-0.00	-0.00	0.02	-0.00	-0.00	0.02	-0.00	0.03	0.00	-0.00	0.00	0.01	0.00	]
G [	-0.00	0.00	0.01	0.00	0.04	-0.00	-0.00	0.00	-0.00	-0.00	0.01	-0.00	0.01	0.02	0.00	-0.00	-0.00	]
T [	-0.00	-0.00	-0.00	0.00	-0.00	0.04	0.00	0.04	-0.00	0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	0.00	]

Frequency matrix

A [	194	193	222	204	217	216	207	218	184	195	189	213	233	190	236	206	172	243	171	137	121	17	11	37	6	865	15	530	52	299	98	150	144	221	224	204	218	253	216	195	217	180	188	198	187	217	219	206	214	206	]
C [	247	232	246	253	252	244	239	236	248	248	254	257	217	262	242	164	214	350	386	222	318	3	17	812	69	21	600	13	766	146	59	265	510	336	281	268	232	225	266	258	252	265	256	259	235	240	237	252	239	225	]
G [	265	275	243	248	230	247	237	237	251	253	243	237	242	266	235	355	318	168	177	347	194	872	48	27	18	3	33	349	30	306	668	255	96	158	211	222	242	213	231	237	219	246	269	241	263	240	238	220	222	237	]
T [	189	195	184	190	196	188	212	204	212	199	209	188	203	177	182	170	191	134	161	189	262	3	819	19	802	6	247	3	47	144	70	225	145	180	179	201	203	204	182	205	207	204	182	197	210	198	201	217	220	227	]

Hypothetical CWM

A [	0.00	0.01	-0.00	-0.01	-0.01	0.00	-0.01	0.01	-0.02	0.05	-0.02	0.03	-0.01	0.00	0.00	-0.00	0.00	]
C [	-0.00	0.00	0.01	0.00	0.02	-0.03	-0.01	0.03	-0.01	-0.01	0.02	-0.02	0.04	0.00	-0.01	0.01	0.00	]
G [	0.01	-0.00	-0.00	0.01	0.00	0.04	-0.01	-0.01	0.01	-0.01	-0.01	0.02	-0.02	0.02	0.02	-0.01	-0.00	]
T [	0.00	0.00	0.00	-0.00	0.00	-0.02	0.04	-0.02	0.04	-0.02	0.02	-0.02	-0.01	-0.01	-0.00	0.00	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1025

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 231

CWM

PFM

HCWM

3 profiles found for the same TF (ZSCAN29) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001067.1	ZSCAN29	ENCSR175SZH	K562	Homo sapiens	MA1602.2
BP001069.1	ZSCAN29	ENCSR422VAG	HepG2	Homo sapiens	MA1602.2
BP001070.1	ZSCAN29	ENCSR635EXI	K562	Homo sapiens	MA1602.2