Detailed information of deep learning profile BP001067.1

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This page shows detailed deep learning-derived predictions and motifs for ZSCAN29 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: ZSCAN29
Model ID: BP001067.1
Cell line/tissue: K562
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA1602.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q8IWY8  
Source: ENCSR175SZH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 -0.00 0.07 -0.00 0.03 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.01 0.00 0.01 -0.00 -0.00 0.03 0.00 -0.00 0.02 -0.00 0.05 -0.00 -0.00 -0.00 0.02 0.00 0.00 ]
G [ 0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 0.02 0.00 -0.00 0.00 0.00 ]
T [ -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 806 797 793 802 858 871 909 771 853 783 778 696 806 867 841 926 840 697 892 859 572 599 73 52 88 13 3133 98 2114 241 1121 488 753 475 940 816 803 849 859 936 843 866 700 761 776 694 787 753 796 788 ]
C [ 895 900 882 871 895 913 842 954 847 848 850 967 982 815 834 795 610 772 1156 1170 835 993 8 84 3017 446 133 2118 22 2726 411 220 722 1983 1178 1003 941 813 850 884 935 868 944 843 838 869 803 872 907 815 ]
G [ 862 870 917 872 803 791 813 845 812 904 932 863 765 841 952 932 1094 1146 683 691 1221 752 3244 247 132 40 12 90 1169 185 1131 2385 885 307 489 795 740 863 772 801 828 817 931 927 936 890 826 843 739 844 ]
T [ 772 768 743 790 779 760 771 765 823 800 775 809 782 812 708 682 791 720 604 615 707 991 10 2952 98 2836 57 1029 30 183 672 242 975 570 728 721 851 810 854 714 729 784 760 804 785 882 919 867 893 888 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.00 -0.00 0.01 -0.03 0.01 -0.04 0.08 -0.01 0.05 -0.01 0.01 0.01 0.01 -0.00 0.00 ]
C [ 0.01 0.02 0.01 0.03 -0.03 -0.01 0.03 0.02 -0.01 0.04 -0.04 0.05 -0.00 -0.01 -0.00 0.02 0.01 ]
G [ 0.00 0.00 0.02 0.00 0.07 0.00 0.00 -0.02 -0.02 -0.03 0.05 -0.01 0.04 0.03 0.01 -0.01 0.00 ]
T [ 0.00 0.00 0.00 0.00 -0.03 0.06 -0.01 0.07 -0.02 0.03 -0.04 -0.01 -0.01 -0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 6841

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 440

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 163

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 122

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 118

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 114

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 103

CWM

PFM

     

HCWM

3 profiles found for the same TF (ZSCAN29) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001068.1 ZSCAN29 ENCSR412YGM GM12878 Homo sapiens MA1602.2
BP001069.1 ZSCAN29 ENCSR422VAG HepG2 Homo sapiens MA1602.2
BP001070.1 ZSCAN29 ENCSR635EXI K562 Homo sapiens MA1602.2
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