Detailed information of deep learning profile BP001055.1

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This page shows detailed deep learning-derived predictions and motifs for NFIC in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIC
Model ID: BP001055.1
Cell line/tissue: K562
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1527.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08651  
Source: ENCSR796ITY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 0.01 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.07 0.03 0.00 0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.01 -0.00 -0.00 0.00 0.04 -0.00 0.01 0.00 0.00 0.00 -0.00 0.12 0.13 -0.00 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 -0.00 -0.00 0.13 0.10 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.07 0.00 0.00 -0.00 0.01 0.00 -0.00 -0.00 ]
T [ 0.00 0.00 0.00 0.02 0.06 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 5058 4598 4523 4393 4755 4264 5464 5322 4007 5057 4509 4284 5033 4938 5551 4307 5517 2378 1292 475 3 261 7304 6880 3264 4105 4418 5522 58 3 0 16075 9511 5150 5226 4276 3595 4019 3952 4919 4798 4220 5180 4618 4037 4364 4983 4551 4928 4309 ]
C [ 3508 3493 3675 4384 3699 4843 3695 3301 3407 3674 3639 4702 3773 3880 3308 3626 3000 6729 6448 144 3 10 8430 4407 6082 4877 4272 785 142 16928 16940 659 575 3376 3148 3828 4723 4506 4835 3737 3929 5075 4115 4007 3680 3602 4132 3746 3828 3910 ]
G [ 3979 3992 3993 3944 4347 3700 3761 4183 4036 4128 4742 3997 4177 3860 4408 4612 3381 3693 939 1905 16935 16580 898 1203 3383 3316 4820 2250 15952 0 0 42 5865 6195 2831 4552 3448 3825 3781 4247 3783 3723 3606 3460 4050 4972 4029 3736 3765 4355 ]
T [ 4398 4860 4752 4222 4142 4136 4023 4137 5493 4084 4053 3960 3960 4265 3676 4398 5045 4143 8264 14419 2 92 311 4453 4214 4645 3433 8386 791 12 3 167 992 2222 5738 4287 5177 4593 4375 4040 4433 3925 4042 4858 5176 4005 3799 4910 4422 4369 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.01 -0.01 -0.02 -0.04 -0.04 -0.01 0.02 0.02 -0.00 0.00 0.00 0.00 -0.04 -0.02 -0.06 0.07 0.04 0.01 0.01 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.02 -0.03 -0.02 -0.07 0.07 0.01 0.02 0.02 0.01 0.00 -0.02 0.12 0.13 0.00 -0.04 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.01 -0.04 0.00 0.13 0.11 -0.03 -0.00 0.01 0.02 0.02 -0.00 0.07 -0.07 -0.02 -0.03 0.02 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 0.01 0.04 0.07 -0.06 -0.02 -0.04 0.01 0.00 0.00 -0.00 0.02 0.02 -0.01 -0.04 -0.04 -0.02 -0.01 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6131

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1163

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 261

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 56

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 52

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 37

CWM

PFM

     

HCWM

3 profiles found for the same TF (NFIC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001052.1 NFIC ENCSR000BQX HepG2 Homo sapiens MA1527.2
BP001053.1 NFIC ENCSR000BSV SK-N-SH Homo sapiens MA1527.2
BP001054.1 NFIC ENCSR000BUT Ishikawa Homo sapiens MA1527.2
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