Detailed information of deep learning profile BP001053.1

  1. Home
  2. Deep Learning Profile > BP001053.1
This page shows detailed deep learning-derived predictions and motifs for NFIC in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIC
Model ID: BP001053.1
Cell line/tissue: SK-N-SH
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1527.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08651  
Source: ENCSR000BSV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.02 0.01 0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 0.04 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.06 0.08 0.00 -0.00 0.00 0.00 ]
G [ 0.00 -0.00 0.00 -0.00 0.00 0.10 0.07 -0.00 -0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.00 -0.00 0.01 0.01 -0.00 ]
T [ 0.00 0.00 0.00 0.02 0.04 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 3813 3783 3675 3563 3688 3447 3753 3865 3674 3695 3623 3582 3845 3901 3758 3526 3949 1499 366 126 0 5 1712 6915 2815 3821 3517 3979 569 169 31 9466 6792 3556 4243 3881 3431 3540 3497 3610 3631 3652 3814 3607 3701 3761 3683 3717 3686 3734 ]
C [ 3300 3412 3461 3471 3528 3567 3546 3329 3372 3513 3477 3546 3366 3242 3138 3374 2842 5804 5819 13 0 4 12525 2511 4335 3561 3390 1707 1215 13573 14300 3487 929 2690 3240 3536 3894 3571 3544 3346 3423 3499 3508 3554 3310 3509 3540 3555 3438 3446 ]
G [ 3391 3388 3356 3450 3430 3476 3347 3368 3464 3401 3252 3504 3397 3549 3848 3400 2873 3013 243 908 14351 14341 67 661 4080 3603 4530 3303 6331 41 6 172 5163 5973 3237 3280 3061 3284 3371 3627 3561 3497 3256 3286 3399 3442 3288 3320 3393 3327 ]
T [ 3847 3768 3859 3867 3705 3861 3705 3789 3841 3742 3999 3719 3743 3659 3607 4051 4687 4035 7923 13304 0 1 47 4264 3121 3366 2914 5362 6236 568 14 1226 1467 2132 3631 3654 3965 3956 3939 3768 3736 3703 3773 3904 3941 3639 3840 3759 3834 3844 ]

Hypothetical CWM

   
A [ 0.00 -0.00 0.00 -0.01 -0.02 -0.03 -0.02 -0.00 0.02 0.01 0.00 0.00 0.00 0.00 -0.02 -0.02 -0.08 0.03 0.02 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.02 -0.02 -0.03 -0.06 0.04 0.00 0.01 0.01 0.01 0.00 -0.01 0.06 0.08 0.01 -0.01 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.01 -0.02 0.01 0.10 0.07 -0.01 0.00 0.01 0.02 0.01 0.01 0.04 -0.05 -0.03 -0.01 0.02 0.01 0.00 ]
T [ 0.00 0.00 0.00 0.01 0.03 0.04 -0.09 -0.02 -0.02 0.00 -0.00 -0.00 0.00 0.01 0.01 0.00 -0.02 -0.02 -0.02 -0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 10527

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 5499

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1561

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 557

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 353

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 131

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 58

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 22

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 21

CWM

PFM

     

HCWM

3 profiles found for the same TF (NFIC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001052.1 NFIC ENCSR000BQX HepG2 Homo sapiens MA1527.2
BP001054.1 NFIC ENCSR000BUT Ishikawa Homo sapiens MA1527.2
BP001055.1 NFIC ENCSR796ITY K562 Homo sapiens MA1527.2
Showing 3 profiles of page 1 from 1 pages
  • 1 (current)