Detailed information of deep learning profile BP001055.1

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This page shows detailed deep learning-derived predictions and motifs for NFIC in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIC
Model ID: BP001055.1
Cell line/tissue: K562
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1527.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08651  
Source: ENCSR796ITY
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.06 0.02 0.00 0.00 0.00 ]
C [ -0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 0.07 -0.00 0.00 0.00 0.00 -0.00 -0.00 0.10 0.13 -0.00 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 -0.00 0.00 -0.00 -0.00 0.13 0.12 -0.00 0.00 0.00 0.00 0.01 -0.00 0.04 0.00 -0.00 -0.00 0.01 0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 0.03 0.07 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 4369 4422 4910 3799 4005 5176 4858 4042 3925 4433 4040 4375 4593 5177 4287 5738 2222 992 167 3 12 791 8386 3433 4645 4214 4453 311 92 2 14419 8264 4143 5045 4398 3676 4265 3960 3960 4053 4084 5493 4137 4023 4136 4142 4222 4752 4860 4398 ]
C [ 4355 3765 3736 4029 4972 4050 3460 3606 3723 3783 4247 3781 3825 3448 4552 2831 6195 5865 42 0 0 15952 2250 4820 3316 3383 1203 898 16580 16935 1905 939 3693 3381 4612 4408 3860 4177 3997 4742 4128 4036 4183 3761 3700 4347 3944 3993 3992 3979 ]
G [ 3910 3828 3746 4132 3602 3680 4007 4115 5075 3929 3737 4835 4506 4723 3828 3148 3376 575 659 16940 16928 142 785 4272 4877 6082 4407 8430 10 3 144 6448 6729 3000 3626 3308 3880 3773 4702 3639 3674 3407 3301 3695 4843 3699 4384 3675 3493 3508 ]
T [ 4309 4928 4551 4983 4364 4037 4618 5180 4220 4798 4919 3952 4019 3595 4276 5226 5150 9511 16075 0 3 58 5522 4418 4105 3264 6880 7304 261 3 475 1292 2378 5517 4307 5551 4938 5033 4284 4509 5057 4007 5322 5464 4264 4755 4393 4523 4598 5058 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.01 -0.02 -0.04 -0.04 -0.01 0.02 0.02 -0.00 0.00 0.00 0.01 -0.04 -0.02 -0.06 0.07 0.04 0.01 0.01 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.02 -0.03 -0.02 -0.07 0.07 -0.00 0.02 0.02 0.01 -0.00 -0.03 0.11 0.13 0.00 -0.04 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.01 -0.04 0.00 0.13 0.12 -0.02 0.00 0.01 0.02 0.02 0.01 0.07 -0.07 -0.02 -0.03 0.02 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 0.01 0.01 0.04 0.07 -0.06 -0.02 -0.04 0.00 0.00 0.00 -0.00 0.02 0.02 -0.01 -0.04 -0.04 -0.02 -0.01 0.01 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 6131

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1163

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 261

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 56

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 52

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 37

CWM

PFM

     

HCWM

3 profiles found for the same TF (NFIC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001052.1 NFIC ENCSR000BQX HepG2 Homo sapiens MA1527.2
BP001053.1 NFIC ENCSR000BSV SK-N-SH Homo sapiens MA1527.2
BP001054.1 NFIC ENCSR000BUT Ishikawa Homo sapiens MA1527.2
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