Detailed information of deep learning profile BP001052.1

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This page shows detailed deep learning-derived predictions and motifs for NFIC in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIC
Model ID: BP001052.1
Cell line/tissue: HepG2
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1527.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08651  
Source: ENCSR000BQX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.02 0.02 0.00 0.00 0.00 0.00 ]
C [ -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 ]
T [ 0.00 0.00 0.00 0.01 0.03 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 ]

Frequency matrix

       
A [ 317 298 326 296 282 315 344 326 328 320 326 312 320 360 311 338 161 58 22 0 4 281 512 210 300 249 348 2 2 0 991 940 313 377 338 289 347 344 298 318 323 339 300 308 340 297 296 329 340 310 ]
C [ 281 322 253 295 292 280 263 284 294 301 295 318 307 271 280 254 469 718 2 0 0 898 257 395 346 337 78 9 1176 1192 178 5 204 242 277 342 284 290 312 304 276 253 295 325 282 293 312 251 272 304 ]
G [ 286 274 306 309 299 282 275 271 263 260 284 274 276 278 281 212 272 58 21 1193 1187 13 76 303 274 392 246 963 0 0 2 225 555 273 270 278 294 246 294 283 264 275 299 260 277 290 310 285 284 264 ]
T [ 309 299 308 293 320 316 311 312 308 312 288 289 290 284 321 389 291 359 1148 0 2 1 348 285 273 215 521 219 15 1 22 23 121 301 308 284 268 313 289 288 330 326 299 300 294 313 275 328 297 315 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.01 -0.01 -0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 -0.01 -0.01 -0.01 0.03 0.02 0.00 0.01 0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.00 0.01 -0.01 -0.01 -0.02 0.02 0.00 0.01 -0.00 0.00 -0.00 -0.01 0.03 0.04 0.00 -0.01 0.00 -0.00 0.00 -0.00 ]
G [ -0.00 0.00 -0.00 0.00 -0.01 0.00 0.04 0.03 -0.01 -0.00 0.00 0.00 0.01 0.00 0.02 -0.02 -0.01 -0.01 0.01 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 0.01 0.00 0.02 0.03 -0.01 -0.01 -0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 -0.01 -0.01 -0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2476

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2371

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 510

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 102

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 53

CWM

PFM

     

HCWM

3 profiles found for the same TF (NFIC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001053.1 NFIC ENCSR000BSV SK-N-SH Homo sapiens MA1527.2
BP001054.1 NFIC ENCSR000BUT Ishikawa Homo sapiens MA1527.2
BP001055.1 NFIC ENCSR796ITY K562 Homo sapiens MA1527.2
Showing 3 profiles of page 1 from 1 pages
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