Detailed information of deep learning profile BP001054.1

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This page shows detailed deep learning-derived predictions and motifs for NFIC in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIC
Model ID: BP001054.1
Cell line/tissue: Ishikawa
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1527.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08651  
Source: ENCSR000BUT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.03 0.01 0.00 0.00 ]
C [ 0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 0.06 -0.00 0.01 0.00 0.00 -0.00 -0.00 0.07 0.09 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.00 0.11 0.09 -0.00 -0.00 0.00 0.00 0.00 0.00 0.03 0.00 0.00 -0.00 0.01 0.00 -0.00 ]
T [ 0.00 0.00 0.00 0.02 0.05 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]

Frequency matrix

       
A [ 4231 4458 4494 4262 4286 4188 4017 4445 4589 4268 4262 4161 4124 4513 4534 4575 4221 5038 1833 353 34 0 8 1524 8273 3134 4770 4241 4659 621 170 21 12106 7284 4076 4983 4394 3729 4203 3899 4066 4045 4186 4479 4153 4317 4388 4296 4286 4164 ]
C [ 4572 4422 4411 4613 4562 4559 4829 4708 4396 4542 4614 4689 4861 4413 4433 3977 4486 3610 7671 7336 16 0 1 16255 3440 6296 4636 4336 2053 1328 17165 17782 4094 1280 3889 4265 4731 5407 4733 4935 4663 4597 4719 4658 4761 4302 4348 4743 4709 4650 ]
G [ 4469 4659 4505 4476 4341 4638 4400 4446 4593 4477 4664 4463 4448 4658 4814 5376 4525 3749 3982 244 603 17832 17818 42 859 4671 4662 6003 4297 9624 23 5 334 7581 7407 4181 4130 3954 4347 4478 4795 4578 4494 4481 4361 4536 4682 4488 4438 4495 ]
T [ 4560 4293 4422 4481 4643 4447 4586 4233 4254 4545 4292 4519 4399 4248 4051 3904 4600 5435 4346 9899 17179 0 5 11 5260 3731 3764 3252 6823 6259 474 24 1298 1687 2460 4403 4577 4742 4549 4520 4308 4612 4433 4214 4557 4677 4414 4305 4399 4523 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 -0.01 -0.03 -0.04 -0.04 -0.01 0.01 0.02 -0.00 -0.00 0.00 0.00 -0.02 -0.02 -0.05 0.04 0.03 0.00 0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 0.01 0.02 -0.02 -0.03 -0.06 0.06 0.00 0.02 0.02 0.01 0.00 -0.02 0.07 0.09 0.00 -0.02 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 -0.03 0.00 0.11 0.09 -0.02 0.00 0.02 0.02 0.02 0.01 0.05 -0.05 -0.03 -0.01 0.02 0.01 -0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 0.01 0.04 0.05 -0.06 -0.03 -0.03 0.00 -0.00 -0.00 -0.00 0.01 0.01 -0.01 -0.04 -0.03 -0.02 -0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2030

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1030

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 476

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 474

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 143

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 20

CWM

PFM

     

HCWM

3 profiles found for the same TF (NFIC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001052.1 NFIC ENCSR000BQX HepG2 Homo sapiens MA1527.2
BP001053.1 NFIC ENCSR000BSV SK-N-SH Homo sapiens MA1527.2
BP001055.1 NFIC ENCSR796ITY K562 Homo sapiens MA1527.2
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