Detailed information of deep learning profile BP001054.1

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This page shows detailed deep learning-derived predictions and motifs for NFIC in Ishikawa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIC
Model ID: BP001054.1
Cell line/tissue: Ishikawa
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1527.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08651  
Source: ENCSR000BUT
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.05 0.02 0.00 0.00 0.00 ]
C [ -0.00 0.00 0.01 -0.00 0.00 0.00 0.03 0.00 0.00 0.00 0.00 -0.00 -0.00 0.09 0.11 0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.09 0.07 -0.00 -0.00 0.00 0.00 0.01 -0.00 0.06 0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.01 0.03 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 4523 4399 4305 4414 4677 4557 4214 4433 4612 4308 4520 4549 4742 4577 4403 2460 1687 1298 24 474 6259 6823 3252 3764 3731 5260 11 5 0 17179 9899 4346 5435 4600 3904 4051 4248 4399 4519 4292 4545 4254 4233 4586 4447 4643 4481 4422 4293 4560 ]
C [ 4495 4438 4488 4682 4536 4361 4481 4494 4578 4795 4478 4347 3954 4130 4181 7407 7581 334 5 23 9624 4297 6003 4662 4671 859 42 17818 17832 603 244 3982 3749 4525 5376 4814 4658 4448 4463 4664 4477 4593 4446 4400 4638 4341 4476 4505 4659 4469 ]
G [ 4650 4709 4743 4348 4302 4761 4658 4719 4597 4663 4935 4733 5407 4731 4265 3889 1280 4094 17782 17165 1328 2053 4336 4636 6296 3440 16255 1 0 16 7336 7671 3610 4486 3977 4433 4413 4861 4689 4614 4542 4396 4708 4829 4559 4562 4613 4411 4422 4572 ]
T [ 4164 4286 4296 4388 4317 4153 4479 4186 4045 4066 3899 4203 3729 4394 4983 4076 7284 12106 21 170 621 4659 4241 4770 3134 8273 1524 8 0 34 353 1833 5038 4221 4575 4534 4513 4124 4161 4262 4268 4589 4445 4017 4188 4286 4262 4494 4458 4231 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 -0.01 -0.02 -0.03 -0.04 -0.01 0.01 0.01 -0.00 -0.00 -0.00 0.00 -0.03 -0.03 -0.06 0.05 0.04 0.01 0.00 0.00 0.00 ]
C [ 0.00 -0.00 -0.00 0.01 0.02 -0.01 -0.03 -0.05 0.05 0.01 0.02 0.02 0.02 0.00 -0.02 0.09 0.11 0.00 -0.03 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 -0.02 0.00 0.09 0.07 -0.02 0.00 0.01 0.02 0.02 0.00 0.06 -0.06 -0.03 -0.02 0.02 0.01 -0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.00 0.00 0.03 0.04 -0.05 -0.02 -0.02 0.00 0.00 -0.00 -0.00 0.02 0.01 -0.01 -0.04 -0.04 -0.03 -0.01 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3363

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2030

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1030

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 476

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 474

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 143

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 20

CWM

PFM

     

HCWM

3 profiles found for the same TF (NFIC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001052.1 NFIC ENCSR000BQX HepG2 Homo sapiens MA1527.2
BP001053.1 NFIC ENCSR000BSV SK-N-SH Homo sapiens MA1527.2
BP001055.1 NFIC ENCSR796ITY K562 Homo sapiens MA1527.2
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