Detailed information of deep learning profile BP001053.1

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This page shows detailed deep learning-derived predictions and motifs for NFIC in SK-N-SH using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIC
Model ID: BP001053.1
Cell line/tissue: SK-N-SH
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1527.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08651  
Source: ENCSR000BSV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.04 0.02 0.00 0.00 0.00 ]
C [ -0.00 0.01 0.01 -0.00 0.00 0.00 0.02 0.00 0.00 0.00 0.00 -0.00 -0.00 0.07 0.10 0.00 -0.00 0.00 -0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.08 0.06 -0.00 -0.00 0.00 0.00 0.00 -0.00 0.04 0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.01 0.02 0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 3844 3834 3759 3840 3639 3941 3904 3773 3703 3736 3768 3939 3956 3965 3654 3631 2132 1467 1226 14 568 6236 5362 2914 3366 3121 4264 47 1 0 13304 7923 4035 4687 4051 3607 3659 3743 3719 3999 3742 3841 3789 3705 3861 3705 3867 3859 3768 3847 ]
C [ 3327 3393 3320 3288 3442 3399 3286 3256 3497 3561 3627 3371 3284 3061 3280 3237 5973 5163 172 6 41 6331 3303 4530 3603 4080 661 67 14341 14351 908 243 3013 2873 3400 3848 3549 3397 3504 3252 3401 3464 3368 3347 3476 3430 3450 3356 3388 3391 ]
G [ 3446 3438 3555 3540 3509 3310 3554 3508 3499 3423 3346 3544 3571 3894 3536 3240 2690 929 3487 14300 13573 1215 1707 3390 3561 4335 2511 12525 4 0 13 5819 5804 2842 3374 3138 3242 3366 3546 3477 3513 3372 3329 3546 3567 3528 3471 3461 3412 3300 ]
T [ 3734 3686 3717 3683 3761 3701 3607 3814 3652 3631 3610 3497 3540 3431 3881 4243 3556 6792 9466 31 169 569 3979 3517 3821 2815 6915 1712 5 0 126 366 1499 3949 3526 3758 3901 3845 3582 3623 3695 3674 3865 3753 3447 3688 3563 3675 3783 3813 ]

Hypothetical CWM

   
A [ 0.00 -0.01 -0.02 -0.02 -0.02 0.00 0.01 0.01 0.00 -0.00 -0.00 0.00 -0.02 -0.02 -0.09 0.04 0.03 0.01 0.00 0.00 0.00 ]
C [ 0.00 0.01 0.02 -0.01 -0.03 -0.05 0.04 0.01 0.01 0.02 0.01 0.00 -0.01 0.07 0.10 0.01 -0.02 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.01 0.01 0.08 0.06 -0.01 0.00 0.01 0.01 0.01 0.00 0.04 -0.06 -0.03 -0.02 0.02 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 0.02 0.03 -0.08 -0.02 -0.02 0.00 0.00 0.00 0.00 0.01 0.02 -0.00 -0.02 -0.03 -0.02 -0.01 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 10527

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 5499

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1561

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 557

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 353

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 138

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 131

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 58

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 22

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_15

Num. of seqlets: 21

CWM

PFM

     

HCWM

3 profiles found for the same TF (NFIC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001052.1 NFIC ENCSR000BQX HepG2 Homo sapiens MA1527.2
BP001054.1 NFIC ENCSR000BUT Ishikawa Homo sapiens MA1527.2
BP001055.1 NFIC ENCSR796ITY K562 Homo sapiens MA1527.2
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