Detailed information of deep learning profile BP001052.1

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This page shows detailed deep learning-derived predictions and motifs for NFIC in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: NFIC
Model ID: BP001052.1
Cell line/tissue: HepG2
Class: SMAD/NF-1 DNA-binding domain factors
Family: Nuclear factor 1
JASPAR ID: MA1527.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P08651  
Source: ENCSR000BQX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.03 0.01 0.00 0.00 0.00 ]
C [ -0.00 -0.00 0.00 0.00 0.00 -0.00 0.00 0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.03 0.04 -0.00 -0.00 -0.00 -0.00 -0.00 ]
G [ -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.04 0.03 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.00 0.00 -0.00 0.00 0.00 0.00 -0.00 ]
T [ 0.00 0.00 0.00 0.00 0.02 0.02 0.00 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 315 297 328 275 313 294 300 299 326 330 288 289 313 268 284 308 301 121 23 22 1 15 219 521 215 273 285 348 1 2 0 1148 359 291 389 321 284 290 289 288 312 308 312 311 316 320 293 308 299 309 ]
C [ 264 284 285 310 290 277 260 299 275 264 283 294 246 294 278 270 273 555 225 2 0 0 963 246 392 274 303 76 13 1187 1193 21 58 272 212 281 278 276 274 284 260 263 271 275 282 299 309 306 274 286 ]
G [ 304 272 251 312 293 282 325 295 253 276 304 312 290 284 342 277 242 204 5 178 1192 1176 9 78 337 346 395 257 898 0 0 2 718 469 254 280 271 307 318 295 301 294 284 263 280 292 295 253 322 281 ]
T [ 310 340 329 296 297 340 308 300 339 323 318 298 344 347 289 338 377 313 940 991 0 2 2 348 249 300 210 512 281 4 0 22 58 161 338 311 360 320 312 326 320 328 326 344 315 282 296 326 298 317 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.01 -0.01 -0.01 0.01 0.01 0.01 0.01 0.01 0.00 0.01 -0.01 -0.01 -0.01 0.03 0.02 0.00 0.01 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.01 -0.01 -0.01 -0.02 0.02 0.00 0.01 0.00 0.00 -0.00 -0.01 0.03 0.04 0.00 -0.01 0.00 -0.00 0.00 -0.00 ]
G [ -0.00 0.00 -0.00 0.00 -0.01 0.00 0.04 0.03 -0.01 -0.00 0.00 -0.00 0.01 0.00 0.02 -0.02 -0.01 -0.01 0.01 0.00 0.00 -0.00 0.00 ]
T [ 0.00 0.00 0.01 0.00 0.02 0.03 -0.01 -0.01 -0.01 0.01 0.00 0.01 0.01 0.01 0.01 0.01 -0.01 -0.01 -0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 4127

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2476

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2371

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 510

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 102

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 53

CWM

PFM

     

HCWM

3 profiles found for the same TF (NFIC) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001053.1 NFIC ENCSR000BSV SK-N-SH Homo sapiens MA1527.2
BP001054.1 NFIC ENCSR000BUT Ishikawa Homo sapiens MA1527.2
BP001055.1 NFIC ENCSR796ITY K562 Homo sapiens MA1527.2
Showing 3 profiles of page 1 from 1 pages
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