Detailed information of deep learning profile BP001039.1

This page shows detailed deep learning-derived predictions and motifs for CUX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CUX1
Model ID: BP001039.1
Cell line/tissue: K562
Class: Homeo domain factors
Family: HD-CUT
JASPAR ID: MA0754.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P39880  
Source: ENCSR178NTX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ 0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.03 -0.00 0.00 0.01 0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 0.00 -0.00 0.00 0.04 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 -0.00 0.00 0.01 -0.00 0.02 0.01 -0.00 -0.00 0.03 0.00 -0.00 0.00 0.00 ]

Frequency matrix

A [ 341 340 349 346 372 320 311 346 334 314 331 397 247 333 383 313 396 367 329 175 1085 20 33 17 1081 3 311 652 222 265 363 368 291 403 313 275 370 337 354 312 335 324 315 307 334 292 316 328 335 338 ]
C [ 182 209 202 162 223 197 213 196 204 207 217 209 205 224 205 186 182 149 123 81 4 37 254 1 7 4 305 90 201 213 186 196 255 193 173 245 188 212 196 186 213 178 199 226 206 197 210 193 217 190 ]
G [ 223 187 205 206 200 188 215 229 218 180 188 206 208 198 193 189 191 272 206 179 11 12 9 1089 18 6 30 89 255 170 196 239 161 178 230 211 172 191 205 214 209 222 186 205 194 205 214 203 178 205 ]
T [ 363 373 353 395 314 404 370 338 353 408 373 297 449 354 328 421 340 321 451 674 9 1040 813 2 3 1096 463 278 431 461 364 306 402 335 393 378 379 369 354 397 352 385 409 371 375 415 369 385 379 376 ]

Hypothetical CWM

A [ -0.00 0.00 0.00 -0.00 -0.00 0.02 -0.02 -0.02 0.01 0.03 -0.02 0.00 0.01 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 -0.01 -0.01 -0.00 0.03 -0.04 -0.01 -0.01 0.01 -0.01 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.01 -0.00 0.01 -0.01 -0.01 -0.03 0.04 -0.00 -0.02 -0.02 0.00 0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.00 0.01 -0.01 0.02 0.01 -0.01 -0.02 0.03 0.00 -0.01 0.00 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2413

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 830

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 615

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 321

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 60

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 43

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 20

3 profiles found for the same TF (CUX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001036.1 CUX1 ENCSR000DYR GM12878 Homo sapiens MA0754.3
BP001037.1 CUX1 ENCSR000EFO K562 Homo sapiens MA0754.3
BP001038.1 CUX1 ENCSR017CEO MCF-7 Homo sapiens MA0754.3
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