JASPAR - CUX1 - BP001037.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for CUX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	CUX1
Model ID:	BP001037.1
Cell line/tissue:	K562
Class:	Homeo domain factors
Family:	HD-CUT
JASPAR ID:	MA0754.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P39880
Source:	ENCSR000EFO
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 3125

Contribution weight matrix (CWM)

A [	0.00	-0.00	-0.00	0.00	0.06	-0.00	0.00	0.01	0.05	-0.00	0.01	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	-0.00	-0.00	0.00	0.06	-0.00	-0.00	-0.00	0.00	-0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.01	0.00	-0.00	0.00	0.01	0.00	-0.00	-0.00	0.00	0.00	-0.00	]
T [	-0.00	-0.00	0.01	0.00	-0.00	0.07	0.00	-0.00	-0.00	0.05	-0.00	-0.00	0.00	0.00	]

Frequency matrix

A [	913	939	859	874	946	935	875	943	916	902	901	887	926	927	900	958	880	947	896	971	1002	852	689	998	2971	3	3	2169	3038	127	1478	1157	854	709	884	868	855	978	893	906	855	877	869	864	868	884	915	898	871	904	]
C [	654	670	722	657	675	694	705	718	714	641	756	706	669	604	721	629	741	678	626	720	761	869	267	216	5	10	3105	16	14	80	467	641	802	746	672	702	737	743	642	668	712	682	723	666	714	686	621	701	673	662	]
G [	730	666	671	720	672	615	648	642	612	750	642	627	698	734	712	701	714	708	682	653	695	841	454	1149	78	4	1	704	46	21	608	594	586	608	641	723	673	634	642	660	643	695	666	689	698	672	680	676	696	629	]
T [	828	850	873	874	832	881	897	822	883	832	826	905	832	860	792	837	790	792	921	781	667	563	1715	762	71	3108	16	236	27	2897	572	733	883	1062	928	832	860	770	948	891	915	871	867	906	845	883	909	850	885	930	]

Hypothetical CWM

A [	0.00	0.01	-0.00	-0.01	0.01	0.06	-0.04	-0.02	0.02	0.06	-0.02	0.01	0.01	-0.00	-0.00	]
C [	0.00	0.00	0.01	0.01	-0.02	-0.06	-0.02	0.06	-0.05	-0.03	-0.01	0.01	0.00	0.01	0.01	]
G [	0.01	0.01	0.01	-0.00	0.02	-0.01	-0.04	-0.05	0.06	-0.01	-0.05	-0.01	0.01	0.01	0.00	]
T [	0.00	-0.00	-0.00	0.02	0.01	-0.02	0.07	0.01	-0.02	-0.03	0.05	-0.00	-0.01	-0.00	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2804

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1067

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 197

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 43

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 34

CWM

PFM

HCWM

3 profiles found for the same TF (CUX1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001036.1	CUX1	ENCSR000DYR	GM12878	Homo sapiens	MA0754.3
BP001038.1	CUX1	ENCSR017CEO	MCF-7	Homo sapiens	MA0754.3
BP001039.1	CUX1	ENCSR178NTX	K562	Homo sapiens	MA0754.3