JASPAR - CUX1 - BP001036.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for CUX1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	CUX1
Model ID:	BP001036.1
Cell line/tissue:	GM12878
Class:	Homeo domain factors
Family:	HD-CUT
JASPAR ID:	MA0754.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P39880
Source:	ENCSR000DYR
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 1129

Contribution weight matrix (CWM)

A [	0.00	-0.00	0.00	0.04	-0.00	0.00	0.01	0.04	-0.00	0.00	0.01	-0.00	]
C [	-0.00	0.00	-0.00	-0.00	-0.00	0.05	0.00	-0.00	0.00	0.00	0.00	0.00	]
G [	0.00	-0.00	0.01	0.00	-0.00	0.00	0.01	0.00	-0.00	-0.00	0.00	-0.00	]
T [	-0.00	0.01	0.00	-0.00	0.04	0.00	-0.00	-0.00	0.04	0.00	-0.00	0.00	]

Frequency matrix

A [	353	339	321	341	332	329	330	340	325	353	325	315	328	364	315	337	362	368	251	366	489	305	237	460	1088	1	0	844	1093	10	536	537	325	196	295	347	332	311	288	329	325	333	331	357	341	304	351	340	316	318	]
C [	252	250	241	224	232	244	253	241	252	254	262	270	217	235	263	214	239	241	259	244	183	290	168	69	21	6	1127	0	14	31	200	202	283	322	254	245	221	244	283	238	240	241	246	222	253	250	229	239	211	265	]
G [	242	241	273	233	247	250	249	234	232	223	239	237	238	243	261	286	219	214	231	252	266	278	134	438	12	5	0	284	18	6	147	207	203	188	208	250	249	245	215	222	230	221	244	252	222	227	232	231	270	221	]
T [	282	299	294	331	318	306	297	314	320	299	303	307	346	287	290	292	309	306	388	267	191	256	590	162	8	1117	2	1	4	1082	246	183	318	423	372	287	327	329	343	340	334	334	308	298	313	348	317	319	332	325	]

Hypothetical CWM

A [	0.01	-0.00	-0.01	0.01	0.04	-0.03	-0.03	0.02	0.04	-0.02	0.00	0.01	-0.00	-0.01	]
C [	-0.00	0.00	0.01	-0.02	-0.02	-0.01	0.05	-0.05	-0.01	-0.01	0.01	-0.00	0.00	0.01	]
G [	0.01	0.00	-0.01	0.02	-0.01	-0.02	-0.04	0.05	-0.01	-0.02	-0.01	0.01	0.00	-0.00	]
T [	-0.01	0.00	0.01	-0.00	-0.02	0.04	0.01	-0.03	-0.03	0.04	0.00	-0.01	0.00	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1466

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1104

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 905

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 110

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 72

CWM

PFM

HCWM

3 profiles found for the same TF (CUX1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001037.1	CUX1	ENCSR000EFO	K562	Homo sapiens	MA0754.3
BP001038.1	CUX1	ENCSR017CEO	MCF-7	Homo sapiens	MA0754.3
BP001039.1	CUX1	ENCSR178NTX	K562	Homo sapiens	MA0754.3