Detailed information of deep learning profile BP001038.1

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This page shows detailed deep learning-derived predictions and motifs for CUX1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CUX1
Model ID: BP001038.1
Cell line/tissue: MCF-7
Class: Homeo domain factors
Family: HD-CUT
JASPAR ID: MA0754.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P39880  
Source: ENCSR017CEO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.04 -0.00 0.00 0.01 0.04 0.00 0.01 0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 -0.00 -0.00 0.00 0.05 -0.00 -0.00 0.00 0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.01 0.00 -0.00 0.00 0.01 0.00 -0.00 -0.00 -0.00 -0.00 0.00 ]
T [ -0.00 0.00 0.01 -0.00 -0.00 0.05 0.00 -0.00 0.00 0.05 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1962 2058 2041 2081 1927 1983 1921 2074 1953 2027 2065 1899 2319 2237 2195 1854 2759 5610 7 20 4837 5863 87 3701 2660 2215 1834 2035 1653 1866 2342 1987 1995 2095 2027 2002 1860 1940 1915 2008 2009 1894 1992 1941 2019 2068 2025 1987 1946 1981 ]
C [ 1057 1050 1041 968 1069 1072 1038 1157 1089 1033 1009 1031 1095 1093 1227 418 242 32 79 5896 22 5 22 528 1036 1235 907 911 1035 930 916 1008 1078 1048 1065 1072 1156 1033 1071 1047 1021 1021 1138 1104 1045 991 1026 1152 1077 1074 ]
G [ 1130 1040 1130 1123 1111 991 1037 998 1046 1046 1112 1149 976 1144 1292 801 2278 103 22 1 993 62 10 838 759 738 951 1052 973 1304 1062 947 970 1008 1109 1021 1083 1083 1109 999 1090 1104 1067 1089 1148 1149 1168 1113 1099 1166 ]
T [ 1806 1807 1743 1783 1848 1909 1959 1726 1867 1849 1769 1876 1565 1481 1241 2882 676 210 5847 38 103 25 5836 888 1500 1767 2263 1957 2294 1855 1635 2013 1912 1804 1754 1860 1856 1899 1860 1901 1835 1936 1758 1821 1743 1747 1736 1703 1833 1734 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.01 0.01 0.04 -0.03 -0.01 0.02 0.04 -0.02 0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.00 0.01 0.00 -0.01 -0.04 -0.01 0.05 -0.03 -0.03 -0.02 0.01 0.00 0.01 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.02 -0.01 -0.03 -0.03 0.04 -0.02 -0.04 -0.00 -0.00 0.00 0.00 ]
T [ 0.00 -0.00 -0.00 0.01 -0.00 -0.01 0.05 0.00 -0.02 -0.02 0.05 -0.00 -0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1984

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1744

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1036

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 404

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 333

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 232

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 172

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 123

CWM

PFM

     

HCWM

3 profiles found for the same TF (CUX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001036.1 CUX1 ENCSR000DYR GM12878 Homo sapiens MA0754.3
BP001037.1 CUX1 ENCSR000EFO K562 Homo sapiens MA0754.3
BP001039.1 CUX1 ENCSR178NTX K562 Homo sapiens MA0754.3
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