Detailed information of deep learning profile BP001039.1

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This page shows detailed deep learning-derived predictions and motifs for CUX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CUX1
Model ID: BP001039.1
Cell line/tissue: K562
Class: Homeo domain factors
Family: HD-CUT
JASPAR ID: MA0754.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P39880  
Source: ENCSR178NTX
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 0.00 0.03 -0.00 -0.00 0.01 0.02 -0.00 0.01 0.00 -0.00 -0.00 ]
C [ 0.00 0.00 0.00 -0.00 0.00 0.00 0.04 0.00 -0.00 0.00 0.00 -0.00 0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.01 0.00 -0.00 0.03 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 376 379 385 369 415 375 371 409 385 352 397 354 369 379 378 393 335 402 306 364 461 431 278 463 1096 3 2 813 1040 9 674 451 321 340 421 328 354 449 297 373 408 353 338 370 404 314 395 353 373 363 ]
C [ 205 178 203 214 205 194 205 186 222 209 214 205 191 172 211 230 178 161 239 196 170 255 89 30 6 18 1089 9 12 11 179 206 272 191 189 193 198 208 206 188 180 218 229 215 188 200 206 205 187 223 ]
G [ 190 217 193 210 197 206 226 199 178 213 186 196 212 188 245 173 193 255 196 186 213 201 90 305 4 7 1 254 37 4 81 123 149 182 186 205 224 205 209 217 207 204 196 213 197 223 162 202 209 182 ]
T [ 338 335 328 316 292 334 307 315 324 335 312 354 337 370 275 313 403 291 368 363 265 222 652 311 3 1081 17 33 20 1085 175 329 367 396 313 383 333 247 397 331 314 334 346 311 320 372 346 349 340 341 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.00 -0.01 0.00 0.03 -0.02 -0.01 0.01 0.02 -0.01 0.01 0.00 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 0.00 0.00 0.00 -0.02 -0.02 -0.00 0.04 -0.03 -0.01 -0.01 0.01 -0.00 0.01 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 -0.01 0.01 -0.01 -0.01 -0.04 0.03 -0.00 -0.01 -0.01 0.00 0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 0.01 0.00 -0.02 0.03 0.01 -0.02 -0.02 0.02 -0.00 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 2413

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 830

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 615

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 321

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 60

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 43

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 20

CWM

PFM

     

HCWM

3 profiles found for the same TF (CUX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001036.1 CUX1 ENCSR000DYR GM12878 Homo sapiens MA0754.3
BP001037.1 CUX1 ENCSR000EFO K562 Homo sapiens MA0754.3
BP001038.1 CUX1 ENCSR017CEO MCF-7 Homo sapiens MA0754.3
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