Detailed information of deep learning profile BP001038.1

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This page shows detailed deep learning-derived predictions and motifs for CUX1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CUX1
Model ID: BP001038.1
Cell line/tissue: MCF-7
Class: Homeo domain factors
Family: HD-CUT
JASPAR ID: MA0754.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P39880  
Source: ENCSR017CEO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 -0.00 -0.00 0.05 0.00 -0.00 0.00 0.05 -0.00 -0.00 0.01 0.00 -0.00 ]
C [ 0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.01 0.00 -0.00 0.00 0.01 -0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.05 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.00 0.01 0.00 0.04 0.01 0.00 -0.00 0.04 0.00 -0.00 0.00 0.00 ]

Frequency matrix

       
A [ 1734 1833 1703 1736 1747 1743 1821 1758 1936 1835 1901 1860 1899 1856 1860 1754 1804 1912 2013 1635 1855 2294 1957 2263 1767 1500 888 5836 25 103 38 5847 210 676 2882 1241 1481 1565 1876 1769 1849 1867 1726 1959 1909 1848 1783 1743 1807 1806 ]
C [ 1166 1099 1113 1168 1149 1148 1089 1067 1104 1090 999 1109 1083 1083 1021 1109 1008 970 947 1062 1304 973 1052 951 738 759 838 10 62 993 1 22 103 2278 801 1292 1144 976 1149 1112 1046 1046 998 1037 991 1111 1123 1130 1040 1130 ]
G [ 1074 1077 1152 1026 991 1045 1104 1138 1021 1021 1047 1071 1033 1156 1072 1065 1048 1078 1008 916 930 1035 911 907 1235 1036 528 22 5 22 5896 79 32 242 418 1227 1093 1095 1031 1009 1033 1089 1157 1038 1072 1069 968 1041 1050 1057 ]
T [ 1981 1946 1987 2025 2068 2019 1941 1992 1894 2009 2008 1915 1940 1860 2002 2027 2095 1995 1987 2342 1866 1653 2035 1834 2215 2660 3701 87 5863 4837 20 7 5610 2759 1854 2195 2237 2319 1899 2065 2027 1953 2074 1921 1983 1927 2081 2041 2058 1962 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.00 -0.00 0.05 -0.02 -0.02 0.00 0.05 -0.01 -0.00 0.01 -0.00 -0.00 0.00 ]
C [ 0.00 0.00 -0.00 -0.00 -0.04 -0.02 0.04 -0.03 -0.03 -0.01 0.02 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.01 0.00 0.01 -0.02 -0.03 -0.03 0.05 -0.01 -0.04 -0.01 0.00 0.01 0.00 0.01 ]
T [ -0.00 -0.00 0.01 0.01 -0.02 0.04 0.02 -0.01 -0.03 0.04 0.01 -0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1984

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1744

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1036

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 782

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 404

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 333

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 232

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 172

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 123

CWM

PFM

     

HCWM

3 profiles found for the same TF (CUX1) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001036.1 CUX1 ENCSR000DYR GM12878 Homo sapiens MA0754.3
BP001037.1 CUX1 ENCSR000EFO K562 Homo sapiens MA0754.3
BP001039.1 CUX1 ENCSR178NTX K562 Homo sapiens MA0754.3
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