JASPAR - CUX1 - BP001037.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for CUX1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	CUX1
Model ID:	BP001037.1
Cell line/tissue:	K562
Class:	Homeo domain factors
Family:	HD-CUT
JASPAR ID:	MA0754.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P39880
Source:	ENCSR000EFO
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 3125

Contribution weight matrix (CWM)

A [	0.00	0.00	-0.00	-0.00	0.05	-0.00	-0.00	0.00	0.07	-0.00	0.00	0.01	-0.00	-0.00	]
C [	-0.00	0.00	0.00	-0.00	-0.00	0.00	0.01	0.00	-0.00	0.00	0.01	-0.00	0.00	0.00	]
G [	0.00	0.00	-0.00	0.00	-0.00	-0.00	-0.00	0.06	0.00	-0.00	-0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	0.00	0.01	-0.00	0.05	0.01	0.00	-0.00	0.06	0.00	-0.00	-0.00	0.00	]

Frequency matrix

A [	930	885	850	909	883	845	906	867	871	915	891	948	770	860	832	928	1062	883	733	572	2897	27	236	16	3108	71	762	1715	563	667	781	921	792	790	837	792	860	832	905	826	832	883	822	897	881	832	874	873	850	828	]
C [	629	696	676	680	672	698	689	666	695	643	660	642	634	673	723	641	608	586	594	608	21	46	704	1	4	78	1149	454	841	695	653	682	708	714	701	712	734	698	627	642	750	612	642	648	615	672	720	671	666	730	]
G [	662	673	701	621	686	714	666	723	682	712	668	642	743	737	702	672	746	802	641	467	80	14	16	3105	10	5	216	267	869	761	720	626	678	741	629	721	604	669	706	756	641	714	718	705	694	675	657	722	670	654	]
T [	904	871	898	915	884	868	864	869	877	855	906	893	978	855	868	884	709	854	1157	1478	127	3038	2169	3	3	2971	998	689	852	1002	971	896	947	880	958	900	927	926	887	901	902	916	943	875	935	946	874	859	939	913	]

Hypothetical CWM

A [	0.01	-0.00	-0.01	-0.00	0.05	-0.03	-0.02	0.01	0.07	-0.02	0.01	0.02	-0.00	-0.00	0.00	]
C [	0.00	0.01	0.01	-0.01	-0.05	-0.01	0.06	-0.05	-0.04	-0.01	0.02	-0.00	0.01	0.01	0.01	]
G [	0.01	0.01	0.00	0.01	-0.01	-0.03	-0.05	0.06	-0.02	-0.06	-0.02	0.01	0.01	0.00	0.00	]
T [	-0.00	-0.00	0.01	0.01	-0.02	0.06	0.02	-0.02	-0.04	0.06	0.01	-0.01	-0.00	0.01	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2804

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1067

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 197

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 43

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 34

CWM

PFM

HCWM

3 profiles found for the same TF (CUX1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001036.1	CUX1	ENCSR000DYR	GM12878	Homo sapiens	MA0754.3
BP001038.1	CUX1	ENCSR017CEO	MCF-7	Homo sapiens	MA0754.3
BP001039.1	CUX1	ENCSR178NTX	K562	Homo sapiens	MA0754.3