JASPAR - CUX1 - BP001036.1 - profile summary

This page shows detailed deep learning-derived predictions and motifs for CUX1 in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	CUX1
Model ID:	BP001036.1
Cell line/tissue:	GM12878
Class:	Homeo domain factors
Family:	HD-CUT
JASPAR ID:	MA0754.3
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P39880
Source:	ENCSR000DYR
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_1

Number of seqlets: 1129

Contribution weight matrix (CWM)

A [	0.00	-0.00	0.00	0.04	-0.00	-0.00	0.00	0.04	-0.00	0.00	0.01	-0.00	]
C [	-0.00	0.00	-0.00	-0.00	0.00	0.01	0.00	-0.00	0.00	0.01	-0.00	0.00	]
G [	0.00	0.00	0.00	0.00	-0.00	0.00	0.05	-0.00	-0.00	-0.00	0.00	-0.00	]
T [	-0.00	0.01	0.00	-0.00	0.04	0.01	0.00	-0.00	0.04	0.00	-0.00	0.00	]

Frequency matrix

A [	325	332	319	317	348	313	298	308	334	334	340	343	329	327	287	372	423	318	183	246	1082	4	1	2	1117	8	162	590	256	191	267	388	306	309	292	290	287	346	307	303	299	320	314	297	306	318	331	294	299	282	]
C [	221	270	231	232	227	222	252	244	221	230	222	215	245	249	250	208	188	203	207	147	6	18	284	0	5	12	438	134	278	266	252	231	214	219	286	261	243	238	237	239	223	232	234	249	250	247	233	273	241	242	]
G [	265	211	239	229	250	253	222	246	241	240	238	283	244	221	245	254	322	283	202	200	31	14	0	1127	6	21	69	168	290	183	244	259	241	239	214	263	235	217	270	262	254	252	241	253	244	232	224	241	250	252	]
T [	318	316	340	351	304	341	357	331	333	325	329	288	311	332	347	295	196	325	537	536	10	1093	844	0	1	1088	460	237	305	489	366	251	368	362	337	315	364	328	315	325	353	325	340	330	329	332	341	321	339	353	]

Hypothetical CWM

A [	0.01	0.00	-0.01	0.00	0.04	-0.03	-0.03	0.01	0.04	-0.02	-0.00	0.01	0.00	-0.01	]
C [	-0.00	0.00	0.01	-0.01	-0.02	-0.01	0.05	-0.04	-0.02	-0.01	0.02	-0.01	0.00	0.01	]
G [	0.01	0.00	-0.00	0.01	-0.01	-0.01	-0.05	0.05	-0.01	-0.02	-0.02	0.01	0.00	-0.00	]
T [	-0.01	-0.00	0.01	0.00	-0.02	0.04	0.02	-0.03	-0.03	0.04	0.01	-0.01	-0.00	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 1466

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1104

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 905

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 110

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 72

CWM

PFM

HCWM

3 profiles found for the same TF (CUX1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001037.1	CUX1	ENCSR000EFO	K562	Homo sapiens	MA0754.3
BP001038.1	CUX1	ENCSR017CEO	MCF-7	Homo sapiens	MA0754.3
BP001039.1	CUX1	ENCSR178NTX	K562	Homo sapiens	MA0754.3