JASPAR - ZKSCAN1 - BP001027.1

This page shows detailed deep learning-derived predictions and motifs for ZKSCAN1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZKSCAN1
Model ID:	BP001027.1
Cell line/tissue:	K562
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA1585.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P17029
Source:	ENCSR882ERE
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 6190

Contribution weight matrix (CWM)

A [	-0.00	0.00	-0.00	0.01	-0.00	-0.00	-0.00	0.16	-0.00	-0.00	0.04	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	0.00	0.13	0.09	0.00	-0.00	0.11	-0.00	-0.00	0.00	-0.00	0.01	-0.00	0.03	0.00	0.00	0.00	]
G [	-0.00	0.01	0.01	0.00	-0.00	0.00	0.00	-0.00	0.00	0.00	0.02	-0.00	0.12	-0.00	0.07	-0.00	0.00	0.00	0.00	]
T [	0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.07	0.00	-0.00	0.13	-0.00	0.01	-0.00	0.02	-0.00	0.00	0.00	-0.00	-0.00	]

Frequency matrix

A [	1404	1304	2378	2260	1350	2268	2654	2560	1262	2766	1176	1041	1107	2813	995	1123	1575	3839	1672	392	3513	28	269	10	6183	26	9	3395	454	31	132	368	267	977	3148	1207	1133	968	2597	821	1099	1366	1126	1229	1128	1499	2204	1641	1484	1439	]
C [	1307	2094	1361	1180	2360	1488	1190	1229	1948	1123	1284	992	1004	1093	1882	674	522	814	391	2651	823	6153	5650	659	1	6082	14	151	401	37	793	76	4684	3208	880	763	1045	3050	1419	2880	1156	1068	1115	1374	2321	1260	1068	1122	1291	1704	]
G [	1229	1209	1177	1537	1042	1045	1214	1326	924	1230	862	971	869	1172	725	698	3595	685	3707	2006	1265	2	15	188	6	63	4	2627	303	6105	187	5473	261	380	1332	3447	3220	860	1149	967	1197	2399	1479	2035	1205	1245	1686	2355	2152	1438	]
T [	2250	1583	1274	1213	1438	1389	1132	1075	2056	1071	2868	3186	3210	1112	2588	3695	498	852	420	1141	589	7	256	5333	0	19	6163	17	5032	17	5078	273	978	1625	830	773	792	1312	1025	1522	2738	1357	2470	1552	1536	2186	1232	1072	1263	1609	]

Hypothetical CWM

A [	0.00	0.03	0.02	0.00	0.02	-0.01	0.02	0.00	0.01	-0.08	0.16	-0.03	-0.06	0.08	-0.00	-0.03	-0.04	0.01	-0.01	0.01	0.00	0.00	0.00	]
C [	0.02	-0.00	0.01	0.04	0.03	0.02	0.02	0.13	0.09	0.04	-0.04	0.11	-0.00	-0.00	0.04	-0.00	0.09	-0.02	0.05	0.01	0.02	0.02	0.02	]
G [	0.01	0.01	0.02	-0.00	0.03	0.06	0.03	-0.03	-0.01	0.04	-0.01	0.04	-0.01	0.07	0.03	0.12	-0.00	0.08	0.01	0.02	0.02	0.01	0.01	]
T [	0.00	0.00	-0.01	0.02	-0.01	-0.00	-0.00	-0.04	-0.00	0.08	-0.07	-0.03	0.13	-0.07	0.02	-0.02	0.02	0.00	0.02	0.01	0.01	0.01	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 598

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 594

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 20

CWM

PFM

HCWM

3 profiles found for the same TF (ZKSCAN1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001024.1	ZKSCAN1	ENCSR000ECJ	HeLa-S3	Homo sapiens	MA1585.2
BP001025.1	ZKSCAN1	ENCSR157CAU	HepG2	Homo sapiens	MA1585.2
BP001026.1	ZKSCAN1	ENCSR449UFF	MCF-7	Homo sapiens	MA1585.2