JASPAR - ZKSCAN1 - BP001024.1

This page shows detailed deep learning-derived predictions and motifs for ZKSCAN1 in HeLa-S3 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZKSCAN1
Model ID:	BP001024.1
Cell line/tissue:	HeLa-S3
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA1585.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P17029
Source:	ENCSR000ECJ
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 1896

Contribution weight matrix (CWM)

A [	-0.00	0.00	-0.00	0.00	0.00	-0.00	-0.00	0.11	-0.00	-0.00	0.03	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	-0.00	-0.00	]
C [	0.00	0.00	0.00	-0.00	0.10	0.04	0.00	0.00	0.07	-0.00	-0.00	0.00	-0.00	0.01	0.00	0.02	0.00	0.00	0.00	]
G [	-0.00	0.01	0.01	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.02	0.00	0.09	-0.00	0.04	-0.00	0.00	-0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.04	-0.00	-0.00	0.10	-0.00	0.01	0.00	0.02	-0.00	0.00	-0.00	0.00	-0.00	]

Frequency matrix

A [	392	629	561	429	620	654	624	392	718	320	325	368	705	331	423	476	1054	502	162	965	18	117	6	1883	12	2	900	155	23	61	131	149	361	820	409	339	301	711	279	331	380	391	413	330	477	639	474	462	456	491	]
C [	586	407	418	684	466	409	451	578	398	452	355	357	385	546	254	201	307	142	780	285	1865	1638	292	5	1843	9	63	173	15	363	64	1325	853	333	279	317	856	483	788	381	410	392	437	671	425	375	412	423	489	486	]
G [	420	444	518	346	396	439	464	335	448	342	404	342	409	301	283	1054	266	1102	615	421	7	28	112	7	31	9	924	158	1851	82	1568	103	210	423	970	940	314	364	353	413	689	460	610	419	408	496	675	606	515	510	]
T [	498	416	399	437	414	394	357	591	332	782	812	829	397	718	936	165	269	150	339	225	6	113	1486	1	10	1876	9	1410	7	1390	133	319	472	320	238	300	425	338	476	771	417	653	436	476	586	386	335	405	436	409	]

Hypothetical CWM

A [	0.00	0.01	-0.01	0.01	-0.00	-0.01	-0.07	0.11	-0.04	-0.05	0.05	-0.02	-0.03	-0.04	-0.00	0.00	0.01	-0.00	0.00	]
C [	0.02	0.01	0.00	-0.00	0.10	0.05	0.02	-0.03	0.07	-0.04	-0.02	0.03	-0.03	0.05	-0.02	0.03	0.00	0.01	0.01	]
G [	-0.00	0.02	0.03	0.02	-0.03	0.00	0.02	-0.03	0.01	-0.01	0.04	0.01	0.09	-0.02	0.05	-0.01	0.01	0.00	0.01	]
T [	0.00	-0.01	0.00	-0.01	-0.04	-0.01	0.05	-0.06	-0.03	0.10	-0.06	0.01	-0.03	0.03	0.00	0.01	0.00	0.00	-0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 120

CWM

PFM

HCWM

3 profiles found for the same TF (ZKSCAN1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001025.1	ZKSCAN1	ENCSR157CAU	HepG2	Homo sapiens	MA1585.2
BP001026.1	ZKSCAN1	ENCSR449UFF	MCF-7	Homo sapiens	MA1585.2
BP001027.1	ZKSCAN1	ENCSR882ERE	K562	Homo sapiens	MA1585.2