JASPAR - ZKSCAN1 - BP001027.1

This page shows detailed deep learning-derived predictions and motifs for ZKSCAN1 in K562 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZKSCAN1
Model ID:	BP001027.1
Cell line/tissue:	K562
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA1585.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P17029
Source:	ENCSR882ERE
Model:	BPNet
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Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 6190

Contribution weight matrix (CWM)

A [	-0.00	-0.00	0.00	0.00	-0.00	0.02	-0.00	0.01	-0.00	0.13	-0.00	0.00	0.07	0.00	-0.00	-0.00	-0.00	-0.00	0.00	]
C [	0.00	0.00	0.00	-0.00	0.07	-0.00	0.12	-0.00	0.02	0.00	0.00	-0.00	0.00	0.00	-0.00	0.00	0.01	0.01	-0.00	]
G [	0.00	0.00	0.00	0.03	-0.00	0.01	-0.00	0.00	-0.00	-0.00	0.11	-0.00	0.00	0.09	0.13	0.00	0.00	0.00	0.00	]
T [	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.04	-0.00	-0.00	0.16	-0.00	-0.00	-0.00	0.01	-0.00	0.00	-0.00	]

Frequency matrix

A [	1609	1263	1072	1232	2186	1536	1552	2470	1357	2738	1522	1025	1312	792	773	830	1625	978	273	5078	17	5032	17	6163	19	0	5333	256	7	589	1141	420	852	498	3695	2588	1112	3210	3186	2868	1071	2056	1075	1132	1389	1438	1213	1274	1583	2250	]
C [	1438	2152	2355	1686	1245	1205	2035	1479	2399	1197	967	1149	860	3220	3447	1332	380	261	5473	187	6105	303	2627	4	63	6	188	15	2	1265	2006	3707	685	3595	698	725	1172	869	971	862	1230	924	1326	1214	1045	1042	1537	1177	1209	1229	]
G [	1704	1291	1122	1068	1260	2321	1374	1115	1068	1156	2880	1419	3050	1045	763	880	3208	4684	76	793	37	401	151	14	6082	1	659	5650	6153	823	2651	391	814	522	674	1882	1093	1004	992	1284	1123	1948	1229	1190	1488	2360	1180	1361	2094	1307	]
T [	1439	1484	1641	2204	1499	1128	1229	1126	1366	1099	821	2597	968	1133	1207	3148	977	267	368	132	31	454	3395	9	26	6183	10	269	28	3513	392	1672	3839	1575	1123	995	2813	1107	1041	1176	2766	1262	2560	2654	2268	1350	2260	2378	1304	1404	]

Hypothetical CWM

A [	0.01	0.01	0.01	0.01	0.02	0.00	0.02	-0.02	0.02	-0.07	0.13	-0.03	-0.07	0.08	-0.00	-0.04	-0.00	-0.00	-0.01	0.02	-0.01	0.00	0.00	]
C [	0.01	0.01	0.02	0.02	0.01	0.08	-0.00	0.12	0.03	0.07	-0.01	0.04	-0.01	0.04	-0.01	-0.03	0.03	0.06	0.03	-0.00	0.02	0.01	0.01	]
G [	0.02	0.02	0.02	0.01	0.05	-0.02	0.09	-0.00	0.04	-0.00	-0.00	0.11	-0.04	0.04	0.09	0.13	0.02	0.02	0.03	0.04	0.01	-0.00	0.02	]
T [	0.00	0.00	0.00	0.01	-0.01	0.01	-0.04	-0.03	-0.00	0.08	-0.06	-0.03	0.16	-0.08	0.01	0.00	0.02	-0.01	0.02	0.00	0.02	0.03	0.00	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 598

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 594

CWM

PFM

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 20

CWM

PFM

HCWM

3 profiles found for the same TF (ZKSCAN1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001024.1	ZKSCAN1	ENCSR000ECJ	HeLa-S3	Homo sapiens	MA1585.2
BP001025.1	ZKSCAN1	ENCSR157CAU	HepG2	Homo sapiens	MA1585.2
BP001026.1	ZKSCAN1	ENCSR449UFF	MCF-7	Homo sapiens	MA1585.2