JASPAR - ZKSCAN1 - BP001026.1

This page shows detailed deep learning-derived predictions and motifs for ZKSCAN1 in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name:	ZKSCAN1
Model ID:	BP001026.1
Cell line/tissue:	MCF-7
Class:	C2H2 zinc finger factors
Family:	More than 3 adjacent zinc fingers
JASPAR ID:	MA1585.2
Taxon:	Vertebrates
Species:	Homo sapiens
Data Type:	ChIP-seq
Uniprot ID:	P17029
Source:	ENCSR449UFF
Model:	BPNet
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Download TF-MoDISco Report

Sequence logo

Motif name: counts.pos_patterns.pattern_0

Number of seqlets: 1164

Contribution weight matrix (CWM)

A [	-0.00	0.00	-0.00	0.01	-0.00	0.00	-0.00	0.09	-0.00	-0.00	0.02	-0.00	-0.00	-0.00	-0.00	-0.00	0.00	0.00	-0.00	]
C [	0.00	0.00	-0.00	-0.00	0.07	0.04	0.00	0.00	0.05	-0.00	-0.00	0.00	-0.00	0.01	-0.00	0.02	-0.00	-0.00	0.00	]
G [	-0.00	0.00	0.00	0.00	-0.00	-0.00	0.00	0.00	0.00	-0.00	0.01	-0.00	0.06	-0.00	0.03	-0.00	0.00	0.00	-0.00	]
T [	0.00	-0.00	-0.00	-0.00	-0.00	-0.00	0.05	-0.00	-0.00	0.07	-0.00	0.01	-0.00	0.02	-0.00	0.00	-0.00	0.00	0.00	]

Frequency matrix

A [	254	403	391	245	410	428	428	249	482	199	197	221	505	176	231	307	731	276	72	672	9	34	1	1162	6	1	598	68	11	14	81	53	209	548	231	202	161	478	136	211	221	236	238	215	273	401	314	281	309	288	]
C [	373	266	220	468	294	258	264	330	226	273	196	211	190	375	136	103	148	104	558	150	1148	1096	69	0	1143	4	25	94	14	204	22	897	595	169	158	176	586	290	516	213	236	231	231	431	277	202	190	257	309	297	]
G [	264	236	300	179	220	222	260	196	269	176	222	191	259	156	158	660	138	712	340	245	3	4	23	0	7	1	537	83	1135	34	999	51	90	285	649	622	194	201	204	216	467	252	405	248	228	345	452	400	288	321	]
T [	273	259	253	272	240	256	212	389	187	516	549	541	210	457	639	94	147	72	194	97	4	30	1071	2	8	1158	4	919	4	912	62	163	270	162	126	164	223	195	308	524	240	445	290	270	386	216	208	226	258	258	]

Hypothetical CWM

A [	0.00	0.01	-0.01	0.01	-0.01	-0.00	-0.06	0.09	-0.03	-0.02	0.03	-0.01	-0.02	-0.02	-0.00	-0.00	0.01	0.00	-0.00	]
C [	0.02	0.01	0.00	0.00	0.07	0.04	0.01	-0.03	0.05	-0.03	-0.01	0.02	-0.01	0.04	-0.02	0.02	0.00	0.00	0.01	]
G [	-0.01	0.01	0.02	0.02	-0.02	0.00	0.02	-0.03	0.01	-0.01	0.03	0.00	0.06	-0.02	0.04	-0.00	0.01	0.01	-0.00	]
T [	0.01	-0.01	0.00	-0.01	-0.03	-0.02	0.05	-0.02	-0.03	0.07	-0.04	0.01	-0.02	0.02	0.00	0.01	0.00	0.01	0.01	]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 287

CWM

PFM

HCWM

3 profiles found for the same TF (ZKSCAN1) in other cell types/tissues

Model ID	Name	Data Source	Cell line/tissue	Species	JASPAR ID
BP001024.1	ZKSCAN1	ENCSR000ECJ	HeLa-S3	Homo sapiens	MA1585.2
BP001025.1	ZKSCAN1	ENCSR157CAU	HepG2	Homo sapiens	MA1585.2
BP001027.1	ZKSCAN1	ENCSR882ERE	K562	Homo sapiens	MA1585.2