Detailed information of deep learning profile BP001021.1

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This page shows detailed deep learning-derived predictions and motifs for STAT3 in MCF 10A using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: STAT3
Model ID: BP001021.1
Cell line/tissue: MCF 10A
Class: STAT domain factors
Family: STAT factors
JASPAR ID: MA0144.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P40763  
Source: ENCSR000DOZ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.07 0.07 0.01 -0.00 -0.00 -0.00 ]
C [ 0.00 0.01 0.00 0.00 -0.00 0.00 0.05 0.00 0.00 0.00 0.00 0.00 -0.00 -0.00 0.00 0.00 0.00 ]
G [ 0.00 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.03 0.08 0.05 0.00 0.00 0.00 -0.00 0.01 0.00 ]
T [ -0.00 -0.00 -0.00 0.00 0.05 0.03 0.00 0.00 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 754 778 741 755 769 734 766 767 749 727 713 687 777 703 692 600 554 1003 433 89 102 321 140 134 51 33 2800 2890 1246 557 570 796 656 623 609 721 721 758 786 744 766 727 745 719 749 782 795 799 840 815 ]
C [ 694 665 652 634 685 741 690 702 616 620 669 778 748 811 699 713 924 541 945 42 22 2425 18 195 1 21 95 2 382 620 698 686 822 741 768 695 699 751 719 673 656 665 730 725 672 662 649 653 658 677 ]
G [ 692 683 722 803 715 741 705 676 760 828 765 731 671 664 845 728 792 715 522 129 709 39 107 2248 2854 2626 0 2 760 577 992 807 696 798 741 791 801 681 652 678 690 702 663 669 693 763 726 705 694 666 ]
T [ 766 780 791 714 737 690 745 761 781 731 759 710 710 728 670 865 636 647 1006 2646 2073 121 2641 329 0 226 11 12 518 1152 646 617 732 744 788 699 685 716 749 811 794 812 768 793 792 699 736 749 714 748 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 -0.01 -0.02 -0.02 -0.00 -0.06 -0.03 0.00 -0.03 0.07 0.07 0.01 -0.01 -0.01 -0.00 ]
C [ 0.01 0.02 0.00 0.01 -0.04 -0.06 0.06 0.09 0.04 -0.00 -0.01 0.01 -0.02 -0.00 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.00 -0.01 0.02 -0.02 -0.01 0.04 0.08 0.05 -0.08 -0.04 0.01 0.00 0.02 0.01 ]
T [ -0.00 -0.01 -0.01 0.01 0.05 0.04 -0.02 0.00 -0.01 -0.06 0.01 -0.02 -0.03 -0.01 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5767

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 5398

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 4920

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 270

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 251

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 224

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 94

CWM

PFM

     

HCWM

3 profiles found for the same TF (STAT3) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001020.1 STAT3 ENCSR000DOQ MCF 10A Homo sapiens MA0144.3
BP001022.1 STAT3 ENCSR000DPB MCF 10A Homo sapiens MA0144.3
BP001023.1 STAT3 ENCSR000EDC HeLa-S3 Homo sapiens MA0144.3
Showing 3 profiles of page 1 from 1 pages
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