Detailed information of deep learning profile BP001014.1

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This page shows detailed deep learning-derived predictions and motifs for CREM in HepG2 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CREM
Model ID: BP001014.1
Cell line/tissue: HepG2
Class: Basic leucine zipper factors (bZIP)
Family: CREB-related factors
JASPAR ID: MA0609.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q03060  
Source: ENCSR903ELW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 0.01 0.01 -0.00 -0.00 0.06 -0.00 -0.00 -0.00 0.01 0.02 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.00 0.01 -0.00 0.00 0.00 0.00 0.00 ]
G [ 0.01 -0.00 0.00 0.01 -0.00 0.03 0.00 -0.00 0.07 -0.00 -0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ -0.00 0.00 0.00 0.00 0.06 0.00 0.00 -0.00 -0.00 0.04 -0.00 -0.00 0.00 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 547 545 569 554 523 522 539 555 530 562 529 545 540 555 489 421 449 391 434 471 448 550 431 387 777 945 918 7 20 2622 5 25 126 965 1654 301 619 557 490 486 505 510 511 484 494 572 485 534 563 566 ]
C [ 830 822 910 833 850 850 846 845 859 790 789 836 751 844 936 768 762 1169 714 1139 921 1026 719 689 828 343 287 77 32 13 2687 15 701 1243 313 973 944 799 784 859 855 855 799 920 830 881 847 869 815 880 ]
G [ 816 831 746 821 829 807 836 807 826 857 912 821 918 868 823 1123 1064 793 1167 757 907 729 1202 1216 474 950 1420 13 2555 71 15 2683 45 318 439 896 742 966 1012 891 883 912 945 856 945 773 857 863 845 749 ]
T [ 548 543 516 533 539 562 520 534 526 532 511 539 532 474 493 429 466 388 426 374 465 436 389 449 662 503 116 2644 134 35 34 18 1869 215 335 571 436 419 455 505 498 464 486 481 472 515 552 475 518 546 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.01 0.02 -0.02 -0.01 0.06 -0.03 -0.01 -0.00 0.02 0.03 -0.01 0.00 0.00 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 -0.01 0.01 -0.03 -0.04 0.07 -0.03 0.01 0.02 -0.01 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 -0.00 0.01 0.02 -0.03 0.03 0.00 -0.03 0.07 -0.04 -0.02 0.00 -0.00 -0.00 0.01 0.01 ]
T [ -0.00 -0.00 0.01 0.01 -0.01 0.06 0.02 0.00 -0.00 -0.03 0.05 -0.01 -0.01 0.01 0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3503

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 2213

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1496

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1129

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1121

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 871

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 389

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 294

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 234

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_14

Num. of seqlets: 22

CWM

PFM

     

HCWM

4 profiles found for the same TF (CREM) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001010.1 CREM ENCSR077DKV K562 Homo sapiens MA0609.3
BP001011.1 CREM ENCSR564TIP WTC11 Homo sapiens MA0609.3
BP001012.1 CREM ENCSR799FCZ HepG2 Homo sapiens MA0609.3
BP001013.1 CREM ENCSR839XZU GM12878 Homo sapiens MA0609.3
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