Detailed information of deep learning profile BP001013.1

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This page shows detailed deep learning-derived predictions and motifs for CREM in GM12878 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CREM
Model ID: BP001013.1
Cell line/tissue: GM12878
Class: Basic leucine zipper factors (bZIP)
Family: CREB-related factors
JASPAR ID: MA0609.3
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: Q03060  
Source: ENCSR839XZU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 0.00 0.00 -0.00 0.02 -0.00 -0.00 0.00 0.00 0.04 -0.00 0.00 0.00 -0.00 ]
C [ 0.00 -0.00 0.00 0.00 -0.00 0.06 0.00 0.00 0.04 -0.00 0.01 0.00 -0.00 0.00 ]
G [ 0.00 0.00 -0.00 0.01 0.01 0.00 0.07 -0.00 0.00 0.00 -0.00 0.00 0.00 0.00 ]
T [ 0.00 -0.00 0.01 0.00 -0.00 0.00 0.00 0.05 -0.00 -0.00 0.01 0.00 0.00 -0.00 ]

Frequency matrix

       
A [ 1104 1034 979 1033 1002 991 989 996 970 966 987 1052 890 1134 1070 811 523 3112 5 15 17 166 4834 152 1034 1202 969 816 1017 923 891 902 898 970 957 895 991 995 1111 1014 1017 1020 1081 1047 1084 1053 1029 1021 1084 1077 ]
C [ 1422 1465 1518 1505 1399 1633 1506 1663 1491 1557 1503 1583 1731 1275 1420 1237 1114 105 4948 0 46 4774 14 2399 1708 1042 1862 1871 1384 1514 1490 1716 1471 1604 1700 1504 1464 1519 1449 1510 1495 1472 1452 1460 1394 1425 1424 1411 1483 1366 ]
G [ 1398 1436 1421 1451 1519 1393 1501 1370 1544 1422 1410 1439 1352 1474 1550 713 1663 1517 0 4957 5 22 110 741 758 1503 1277 1336 1501 1554 1632 1298 1650 1383 1315 1504 1458 1405 1418 1404 1447 1426 1351 1363 1430 1451 1426 1477 1416 1495 ]
T [ 1048 1037 1054 983 1052 955 976 943 967 1027 1072 898 999 1089 932 2211 1672 238 19 0 4904 10 14 1680 1472 1225 864 949 1070 981 959 1056 953 1015 1000 1069 1059 1053 994 1044 1013 1054 1088 1102 1064 1043 1093 1063 989 1034 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.00 0.01 -0.00 -0.01 0.03 -0.02 -0.00 -0.00 0.02 0.05 -0.01 0.01 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.00 0.00 0.01 -0.00 -0.02 0.06 -0.02 -0.00 0.04 -0.03 0.02 0.01 0.00 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.01 0.01 0.01 -0.03 0.07 -0.03 -0.02 0.01 -0.00 -0.00 0.01 0.01 0.01 ]
T [ -0.00 0.00 0.00 -0.00 0.02 0.02 -0.01 0.00 -0.03 0.05 -0.02 -0.02 0.02 0.01 0.00 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 5152

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 2567

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 1472

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 1249

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 1237

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 1216

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 1186

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 1154

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 493

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 452

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 124

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 58

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 43

CWM

PFM

     

HCWM

4 profiles found for the same TF (CREM) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP001010.1 CREM ENCSR077DKV K562 Homo sapiens MA0609.3
BP001011.1 CREM ENCSR564TIP WTC11 Homo sapiens MA0609.3
BP001012.1 CREM ENCSR799FCZ HepG2 Homo sapiens MA0609.3
BP001014.1 CREM ENCSR903ELW HepG2 Homo sapiens MA0609.3
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